NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS20369.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20369.1 Public Mus musculus 6 Lsm3 23 108 98 CCDS HistoryNCBI Gene:67678Re-query CCDS DB by CCDS ID:20369.1Re-query CCDS DB by GeneID:67678See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20369.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040607.5 ENSMUSP00000044178.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040607.5Link to Ensembl Protein Viewer:ENSMUSP00000044178.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000040607Re-query CCDS DB by Protein ID:ENSMUSP00000044178
Original member Current member EBI ENSMUST00000206947.1 ENSMUSP00000145568.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000206947.1Link to Ensembl Protein Viewer:ENSMUSP00000145568.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000206947Re-query CCDS DB by Protein ID:ENSMUSP00000145568
Original member Current member NCBI NM_026309.2 NP_080585.1 Accepted alive Link to Nucleotide Sequence:NM_026309.2Link to Protein Sequence:NP_080585.1Re-query CCDS DB by Nucleotide ID:NM_026309Re-query CCDS DB by Protein ID:NP_080585Link to BLAST:NP_080585.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080585.1 102 P62311 102 100% 0 0

Chromosomal Locations for CCDS 20369.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 91516058 91516078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 91517048 91517158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 91519549 91519644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 91522241 91522321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (309 nt):
ATGGCGGACGACGTAGATCAGCAACAGACCACCAATACCGTAGAGGAGCCCCTGGATCTGATCAGGCTCA
GCCTGGATGAGCGAATTTATGTGAAAATGAGAAATGACCGAGAGCTTCGAGGCAGACTACACGCTTATGA
TCAACATTTAAATATGATCCTGGGAGATGTAGAAGAAACTGTGACAACGATAGAGATTGATGAGGAGACA
TATGAAGAGATATATAAATCCACAAAACGAAACATCCCTATGCTCTTCGTCCGGGGAGATGGCGTCGTTC
TAGTCGCCCCTCCATTGAGAGTTGGCTGA

Translation (102 aa):
MADDVDQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEET
YEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH