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Report for CCDS16356.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16356.1 Public Mus musculus 2 Or4c15 23 108 98 CCDS HistoryNCBI Gene:258025Re-query CCDS DB by CCDS ID:16356.1Re-query CCDS DB by GeneID:258025See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16356.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099808.1 ENSMUSP00000097396.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099808.1Link to Ensembl Protein Viewer:ENSMUSP00000097396.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000099808Re-query CCDS DB by Protein ID:ENSMUSP00000097396
Original member Current member EBI ENSMUST00000213412.1 ENSMUSP00000150336.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213412.1Link to Ensembl Protein Viewer:ENSMUSP00000150336.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213412Re-query CCDS DB by Protein ID:ENSMUSP00000150336
Original member Current member EBI ENSMUST00000215205.1 ENSMUSP00000150571.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215205.1Link to Ensembl Protein Viewer:ENSMUSP00000150571.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215205Re-query CCDS DB by Protein ID:ENSMUSP00000150571
Original member Current member NCBI NM_001011804.1 NP_001011804.1 Accepted alive Link to Nucleotide Sequence:NM_001011804.1Link to Protein Sequence:NP_001011804.1Re-query CCDS DB by Nucleotide ID:NM_001011804Re-query CCDS DB by Protein ID:NP_001011804Link to BLAST:NP_001011804.1

Chromosomal Locations for CCDS 16356.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 88929378 88930313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGCAAAACCAGAGTTTTGTAACAGAATTCATATTCCTTGGACTTTCACAGAACCCTAAAGTCCAGAAAA
TAGTTTTTATTGTATTTTTATTTGTCTACATTGCAACTGTTGGGGGCAACATGATAATTGTGGTGACCAT
TGTCTGTAGCCCAGCATTGATAGACTGCCCCATGTACTTCTTTTTGGCATTCTTGTCCCTATTGGATGCA
TGCTTCTCTTCTGTCATCACACCAAAGATGGTTGTGGACTCCCTGTATGAGAAGAAAACTATCTCCTTTG
AAGGATGTATGATGCAGTTATTTGCTGAGCACTTCCTTGCAGCAGTAGAAGTGATTGTCTTGACAGCCAT
GGCCTATGACCGCTATGTAGCAATTTGCAAGCCCTTGCACTACTCTTCCATCATGAACTGGAGGCTCTGT
GGCACACTTATGGGGATAGCATGGACAGGGGGCTTCTTGCATTCTATCATACAAATTATCTTCACGTTGC
AATTGCCCTTCTGTGGACCAAATGTCATCGATCATTTCATGTGTGACTTGTTCCCATTACTGGAACTTGC
CTGCACTGATACTCATATCTTTGGCCTTTTAGTGGTTGCCAACAGTGGGTCTATCTGCATCATAATCTTC
TCTATTTTGCTGGTCTCCTATGGTGTCATCCTGTTCTCTCTGAAAGCTCACAGTTCTGAAGGGCGATGGA
AAGCTCTCTCCACATGTGGATCCCACATTGCAGTTGTGGTTTTGTTCTTTGTCCCGTGTATATTTATTTA
TGCACGTCCTCCATCTGCTTTCTCCTTTGATAAAATGGTGGCGATATTTTATACTATCCTAACTCCCTTG
CTCAATCCTGTGATTTATACTTTTCGGAATAAGGACATGAAAAATGCTATGAAGAAAGTGTGGAAGAGGT
TGGCAGTGGTTTCTGATGGAAAGTGA

Translation (311 aa):
MQNQSFVTEFIFLGLSQNPKVQKIVFIVFLFVYIATVGGNMIIVVTIVCSPALIDCPMYFFLAFLSLLDA
CFSSVITPKMVVDSLYEKKTISFEGCMMQLFAEHFLAAVEVIVLTAMAYDRYVAICKPLHYSSIMNWRLC
GTLMGIAWTGGFLHSIIQIIFTLQLPFCGPNVIDHFMCDLFPLLELACTDTHIFGLLVVANSGSICIIIF
SILLVSYGVILFSLKAHSSEGRWKALSTCGSHIAVVVLFFVPCIFIYARPPSAFSFDKMVAIFYTILTPL
LNPVIYTFRNKDMKNAMKKVWKRLAVVSDGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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