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Report for CCDS15994.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15994.1 Public Mus musculus 2 Or1b1 23 108 98 CCDS HistoryNCBI Gene:259053Re-query CCDS DB by CCDS ID:15994.1Re-query CCDS DB by GeneID:259053See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 15994.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100144.1 ENSMUSP00000097722.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100144.1Link to Ensembl Protein Viewer:ENSMUSP00000097722.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000100144Re-query CCDS DB by Protein ID:ENSMUSP00000097722
Original member Current member EBI ENSMUST00000215927.1 ENSMUSP00000150819.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215927.1Link to Ensembl Protein Viewer:ENSMUSP00000150819.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215927Re-query CCDS DB by Protein ID:ENSMUSP00000150819
Original member Current member EBI ENSMUST00000213817.1 ENSMUSP00000150852.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213817.1Link to Ensembl Protein Viewer:ENSMUSP00000150852.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213817Re-query CCDS DB by Protein ID:ENSMUSP00000150852
Original member Current member NCBI NM_147051.1 NP_667262.1 Accepted alive Link to Nucleotide Sequence:NM_147051.1Link to Protein Sequence:NP_667262.1Re-query CCDS DB by Nucleotide ID:NM_147051Re-query CCDS DB by Protein ID:NP_667262Link to BLAST:NP_667262.1

Chromosomal Locations for CCDS 15994.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 37104695 37105648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (954 nt):
ATGAGCTGTGCCCCGAATGCTTCACATTCTCCAATCTTCTTGCTCCTTGGGTTCTCAAGGGCTGGTGTGC
CCCACACTTTCCTCTTTTTATTGTTCCTATTTATTTATCTGACCACCATATTGGGGAATGTGACTTTGGT
ACTGCTCATCTCTTGGGACTCCAGGCTCCACTCACCTATGTATTATCTCTTGCGTGGCCTCTCCATGATA
GACTTGGGACTATCCACAGTCACCCTGCCACAGCTGTTGGTTCATCTGTCATCTGATTCTCCAGCCATTC
CTGCTGCCCGCTGTTTGACTCAGTTCTTTTTCTTTTATGCATTTGGAGTCACAGATACACTTGTCATTGC
TGTCATGGCTCTGGATCGCTATGTGGCCATCTGTGACCCTCTGCACTATGCTTTGGTGATGAATCGACAA
ATTTGTGCCCGGTTACTGGCCTTGAGCTGGGTGGTATCTATAGTACACACCATGCTGCATGTGGGACTCA
TCCTGCCACTGTGTTGGGCTGGAGATGCTGGGGGCAATGTTAAACTTCCTCACTTCTTTTGTGATCACCG
ACCACTCCTGCGAGCCTCTTGCTCTGACACACATTCCAATGAGCTGGCTATATTCTTGGAGGGTGGCTTT
CTAATGTTGGGACCTTGTTCCCTTATTGTACTTTCCTATGCCCGAATTGGGATCACCATCTTACGATTGC
CTTCAGCTGCTGGTCGCCGCAGAGCAGTCTCCACCTGTGGATCCCACCTCACCATGGTTGGCTTCCTGTA
TGGCACAATCATTTGGGTCTATTTCCAGCCTCCCTCACAGAACTCCCGGAATCAAGACATGGTGGCTTCA
GTAATGTACACTGCTATTACCCCATTGGCTAACCCATTTGTTTATAGTCTCCGTAATAAGGATGTGAAAG
GTGCCCTCCACAGACTACTGAGACAGGGGAGAGTGGACTCCTGA

Translation (317 aa):
MSCAPNASHSPIFLLLGFSRAGVPHTFLFLLFLFIYLTTILGNVTLVLLISWDSRLHSPMYYLLRGLSMI
DLGLSTVTLPQLLVHLSSDSPAIPAARCLTQFFFFYAFGVTDTLVIAVMALDRYVAICDPLHYALVMNRQ
ICARLLALSWVVSIVHTMLHVGLILPLCWAGDAGGNVKLPHFFCDHRPLLRASCSDTHSNELAIFLEGGF
LMLGPCSLIVLSYARIGITILRLPSAAGRRRAVSTCGSHLTMVGFLYGTIIWVYFQPPSQNSRNQDMVAS
VMYTAITPLANPFVYSLRNKDVKGALHRLLRQGRVDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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