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Report for CCDS20793.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20793.1 Public Mus musculus 7 Vmn1r69 23 108 98 CCDS HistoryNCBI Gene:252904Re-query CCDS DB by CCDS ID:20793.1Re-query CCDS DB by GeneID:252904See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20793.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000163658.2 ENSMUSP00000129646.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163658.2Link to Ensembl Protein Viewer:ENSMUSP00000129646.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163658Re-query CCDS DB by Protein ID:ENSMUSP00000129646
Original member Current member EBI ENSMUST00000176707.2 ENSMUSP00000134833.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000176707.2Link to Ensembl Protein Viewer:ENSMUSP00000134833.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000176707Re-query CCDS DB by Protein ID:ENSMUSP00000134833
Original member Current member EBI ENSMUST00000176284.8 ENSMUSP00000134993.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000176284.8Link to Ensembl Protein Viewer:ENSMUSP00000134993.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000176284Re-query CCDS DB by Protein ID:ENSMUSP00000134993
Original member Current member EBI ENSMUST00000226190.1 ENSMUSP00000153891.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226190.1Link to Ensembl Protein Viewer:ENSMUSP00000153891.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226190Re-query CCDS DB by Protein ID:ENSMUSP00000153891
Original member Current member EBI ENSMUST00000226228.1 ENSMUSP00000154076.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226228.1Link to Ensembl Protein Viewer:ENSMUSP00000154076.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226228Re-query CCDS DB by Protein ID:ENSMUSP00000154076
Original member Current member EBI ENSMUST00000226160.1 ENSMUSP00000154435.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226160.1Link to Ensembl Protein Viewer:ENSMUSP00000154435.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226160Re-query CCDS DB by Protein ID:ENSMUSP00000154435
Original member Current member NCBI NM_145842.3 NP_665841.1 Accepted alive Link to Nucleotide Sequence:NM_145842.3Link to Protein Sequence:NP_665841.1Re-query CCDS DB by Nucleotide ID:NM_145842Re-query CCDS DB by Protein ID:NP_665841Link to BLAST:NP_665841.1

Chromosomal Locations for CCDS 20793.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 10579843 10580802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (960 nt):
ATGGGTGTAGCCACAATTAAAGAGAATCAAGCCCAATCGAAGATGGATTTCCGGAATCTGGCAATCAAAA
TAATTTTCTTATCACAAACTACAATTGGAATTCTGGGAAATTTCTCTCTTATAATCTACTATGTAGTCTA
CTATATAGTATATACATTAAAGCCAACAGATTTGATTCTCATGCACCTAGTGACATCGAATGCCTTGATG
GTTCTCTCTACAGGAGTGCCTCACACAATGGCAGCTTTTGGCTTGACACACTTATTAAATGATTTGGGAT
GCAGACTAATTTTGTACATTCAAAGAGTTGGCCGGAGTATATCCATTGGCAGTACCTGTCTCTTGAGTAT
CTTCCAGGCTATCATCATCAGTCACAGGGAATCTTGTTATAAGGGTCAAAAAGTCAAATCTGCAAAGTAC
GTTGGCTACTCCTTGTCCCTTCTCTGGGTCCTGCACATTTTTATAAATTTCATTCTCTTTGTGGACATAT
TTATCAAAAGGAACAGGAATAACATGACAAGAGACCGTGATTTTAAATACTGCTACATTGTAGGGCAAAA
TGAATTCAGTGACTTACTCTATGTAGCATTAGTGGTATGCCCTGAAATCTTATCTTCTGTGCTCATCACC
TATTCCAGTGGCTCCATGATTGGCATCCTGTACAGACACAAGCAGAGGGTTCAACATATCCGCAGCTTTC
ATGTTTCCAGCAGGAACTCCCCTGAGTGGAGAGCTACCCAGAACATTCTGGTCCTCGTGTCTACATTTCT
GGGTTTTTATACTCTCTCTTCCATCTTACAAGGCTGCATTGCTCTTCAGAATAATCCCAATTGGTGGCTC
CTAAACATCAATCGACTCACTTCTATGTGTTTTCCCACATTTGCTCCCTTTGTTTTGATGAGCCATTACT
CTTTTATGCCCAAACTCAGTTTGACCTGGATAAGGAATAAGACCTCTTAA

Translation (319 aa):
MGVATIKENQAQSKMDFRNLAIKIIFLSQTTIGILGNFSLIIYYVVYYIVYTLKPTDLILMHLVTSNALM
VLSTGVPHTMAAFGLTHLLNDLGCRLILYIQRVGRSISIGSTCLLSIFQAIIISHRESCYKGQKVKSAKY
VGYSLSLLWVLHIFINFILFVDIFIKRNRNNMTRDRDFKYCYIVGQNEFSDLLYVALVVCPEILSSVLIT
YSSGSMIGILYRHKQRVQHIRSFHVSSRNSPEWRATQNILVLVSTFLGFYTLSSILQGCIALQNNPNWWL
LNINRLTSMCFPTFAPFVLMSHYSFMPKLSLTWIRNKTS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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