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Report for CCDS27536.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27536.3 Public Mus musculus 15 Cyp11b2 23 108 98 CCDS HistoryNCBI Gene:13072Re-query CCDS DB by CCDS ID:27536.3Re-query CCDS DB by GeneID:13072See the combined annotation on chromosome 15 in Sequence Viewer

Public Note for CCDS 27536.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript data. It should be noted that this N-terminal extension is specific to mouse and rat. The updated start codon has a strong Kozak signal, as does the much better conserved downstream start codon, and it is therefore expected that the upstream start codon would be used according to the ribosome scanning model. There is no experimental evidence indicating which start codon is preferentially used in vivo.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 27536.3

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000238900.1 ENSMUSP00000158954.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000238900.1Link to Ensembl Protein Viewer:ENSMUSP00000158954.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000238900Re-query CCDS DB by Protein ID:ENSMUSP00000158954
Original member Current member NCBI NM_009991.4 NP_034121.4 Accepted alive Link to Nucleotide Sequence:NM_009991.4Link to Protein Sequence:NP_034121.4Re-query CCDS DB by Nucleotide ID:NM_009991Re-query CCDS DB by Protein ID:NP_034121Link to BLAST:NP_034121.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034121.4 500 P15539 500 100% 0 0

Chromosomal Locations for CCDS 27536.3

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 74851039 74851152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 74851419 74851607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 74851695 74851773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 74852006 74852172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 74853039 74853193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 74853464 74853667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 74853796 74853995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 74855430 74855585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 74855987 74856225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1503 nt):
ATGGCTCTCAGGGTGACAGCAGATGTGTGGCTGGCAAGACCCTGGCAGTGCCTGCACAGGACAAGGGCAC
TGGGCACCACGGCAACACTGGCCCCAAAGACCCTGCAGCCCTTTGAAGCCATACCACAGTACTCCAGGAA
CAAGTGGCTGAAGATGATACAGATCCTGAGGGAGCAGGGCCAAGAAAACCTACACCTGGAGATGCATCAG
GTCTTCCGGGAGCTGGGGCCCATTTTCAGGCACAGTGTAGGGAAAACACAGATCGTATCTGTGATGTTGC
CGGAGGATGCTGAGAAGTTGCACCAGGTGGAGAGTATGCTCCCCCGTCGGATGCACCTGGAGCCCTGGGT
GGCCCACAGAGAACTCCGTGGCCTGAGACGTGGTGTGTTCTTGCTAAATGGGCCAGAATGGCGTCTCAAC
CGACTGCGGCTGAACCGAAATGTGCTGTCACCAAAAGCCGTTCAAAAATTTGTCCCCATGGTGGACATGG
TAGCAAGGGACTTCTTGGAGACCTTGAAAGAGAAGGTGCTTCAAAATGCTCGTGGGAGCCTTACCATGGA
TGTCCAGCAAAGCCTCTTCAACTACACTATAGAAGCCAGCAACTTTGCTCTTTTTGGGGAACGGCTAGGC
CTCCTTGGCCATGACCTGAGCCCTGGCAGCCTGAAGTTTATCCATGCCCTGCATTCTATGTTCAAGTCCA
CCTCACAGCTCCTGTTCTTACCCAAGAGCTTGACTCGCTGGACAAGCACTCGGGTGTGGAAAGAACATTT
CGATGCCTGGGATGTCATCTCTGAGTATGCCAACAGATGTATCTGGAAGGTGCACCAGGAGCTCAGACTC
GGCAGCTCTCAGACCTACAGTGGCATTGTGGCGGAACTAATATCTCAGGGATCTTTGCCTCTCGACGCCA
TCAAAGCGAACTCTATGGAGCTCACCGCTGGGAGCGTTGACACGACAGCAATCCCCTTGGTAATGACCCT
TTTTGAGCTGGCTCGGAACCCAGATGTTCAGAAGGCCCTGAGGCAGGAGAGCCTGGCAGCTGAGGCCAGC
ATCGCTGCAAATCCTCAGAAGGCCATGTCAGACCTGCCCTTGCTGAGGGCTGCCCTTAAAGAGACCTTGA
GGCTCTATCCTGTTGGTGGCTTTTTGGAGAGAATTCTAAGCTCAGACTTGGTGCTTCAGAACTACCATGT
CCCTGCTGGGACATTGGTCCTACTTTATCTCTACTCCATGGGCCGAAACCCTGCAGTGTTCCCAAGGCCT
GAACGCTATATGCCTCAGCGCTGGCTGGAGAGGAAAAGGAGTTTCCAGCACCTAGCCTTTGGCTTTGGGG
TGCGCCAGTGCCTGGGGAGGCGCCTGGCAGAGGTGGAGATGATGCTCCTGCTTCACCATATACTGAAAAC
CTTCCAGGTGGAGACACTGAGGCAAGAGGATGTGCAGATGGCCTACCGCTTTGTTTTGATGCCCAGCTCC
AGCCCTGTCCTCACTTTCCGGCCTGTCAGCTAG

Translation (500 aa):
MALRVTADVWLARPWQCLHRTRALGTTATLAPKTLQPFEAIPQYSRNKWLKMIQILREQGQENLHLEMHQ
VFRELGPIFRHSVGKTQIVSVMLPEDAEKLHQVESMLPRRMHLEPWVAHRELRGLRRGVFLLNGPEWRLN
RLRLNRNVLSPKAVQKFVPMVDMVARDFLETLKEKVLQNARGSLTMDVQQSLFNYTIEASNFALFGERLG
LLGHDLSPGSLKFIHALHSMFKSTSQLLFLPKSLTRWTSTRVWKEHFDAWDVISEYANRCIWKVHQELRL
GSSQTYSGIVAELISQGSLPLDAIKANSMELTAGSVDTTAIPLVMTLFELARNPDVQKALRQESLAAEAS
IAANPQKAMSDLPLLRAALKETLRLYPVGGFLERILSSDLVLQNYHVPAGTLVLLYLYSMGRNPAVFPRP
ERYMPQRWLERKRSFQHLAFGFGVRQCLGRRLAEVEMMLLLHHILKTFQVETLRQEDVQMAYRFVLMPSS
SPVLTFRPVS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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