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Report for CCDS80906.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80906.1 Public Mus musculus 8 Yju2b 23 108 98 CCDS HistoryNCBI Gene:67736Re-query CCDS DB by CCDS ID:80906.1Re-query CCDS DB by GeneID:67736See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80906.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000005120.11 ENSMUSP00000005120.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000005120.11Link to Ensembl Protein Viewer:ENSMUSP00000005120.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000005120Re-query CCDS DB by Protein ID:ENSMUSP00000005120
Original member Current member NCBI NM_001294281.1 NP_001281210.1 Accepted alive Link to Nucleotide Sequence:NM_001294281.1Link to Protein Sequence:NP_001281210.1Re-query CCDS DB by Nucleotide ID:NM_001294281Re-query CCDS DB by Protein ID:NP_001281210Link to BLAST:NP_001281210.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001281210.1 198 Q9D516-2 198 100% 0 0

Chromosomal Locations for CCDS 80906.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 84258903 84258926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84260294 84260466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84260543 84260685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84261740 84261800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84262993 84263048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84263862 84263944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84264309 84264362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84266836 84266838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (597 nt):
ATGGGTGAAAGGAAAGGCCAGAACAAGTACTACCCCCCAGACTTCAACCCCGAAAAGCATGGCTCTCTCA
ACCGATACCACAACAGCCACCCACTTCGAGAACGGGCTCGGAAGCTCTCACAAGGCATCCTTGTTATCCG
ATTTGAAATGCCATACAACATCTGGTGTGACGGCTGTAAGAACCACATCGGCATGGGTGTGCGCTACAAT
GCAGAAAAGAAGAAGGTTGGCAACTATTACACGACTCCAATCTACAGGTTCAGGATGAAATGCCACCTCT
GTGTCAACTACATCGAGATGCAAACAGACCCTGCCAACTGTGACTATGTCATCGTGAGTGGTGCCAGTCG
CAAGGAGGAGCGTTGGGACATGGAAGACAACGAGCAGGTGCTGACCACAGAGCATGAGAAGAAAGAGAAG
CTGGAGACGGATGCCATGTTCCGCCTAGAGCATGGTGAGGCTGACCGCAGCACACTGAAGAAGGCCCTCC
CCACACTCAGCCACATCCAGGAAGCGCAGAATGCCTGGAAGGATGACTTCGCTCTGAATAGCATGCTACG
GAGGCACTTCCGGCTTATGAGGACAAGCAGCGAATGA

Translation (198 aa):
MGERKGQNKYYPPDFNPEKHGSLNRYHNSHPLRERARKLSQGILVIRFEMPYNIWCDGCKNHIGMGVRYN
AEKKKVGNYYTTPIYRFRMKCHLCVNYIEMQTDPANCDYVIVSGASRKEERWDMEDNEQVLTTEHEKKEK
LETDAMFRLEHGEADRSTLKKALPTLSHIQEAQNAWKDDFALNSMLRRHFRLMRTSSE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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