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Report for CCDS28390.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28390.1 Public Mus musculus 17 Plg 23 108 98 CCDS HistoryNCBI Gene:18815Re-query CCDS DB by CCDS ID:28390.1Re-query CCDS DB by GeneID:18815See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28390.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000014578.6 ENSMUSP00000014578.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000014578.6Link to Ensembl Protein Viewer:ENSMUSP00000014578.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000014578Re-query CCDS DB by Protein ID:ENSMUSP00000014578
Original member Current member NCBI NM_008877.3 NP_032903.3 Accepted alive Link to Nucleotide Sequence:NM_008877.3Link to Protein Sequence:NP_032903.3Re-query CCDS DB by Nucleotide ID:NM_008877Re-query CCDS DB by Protein ID:NP_032903Link to BLAST:NP_032903.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032903.3 812 P20918 812 100% 0 0

Chromosomal Locations for CCDS 28390.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 12378668 12378716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12382082 12382217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12384394 12384500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12388490 12388604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12390217 12390356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12391749 12391869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12393075 12393193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12395622 12395784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12396553 12396695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12398090 12398252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12403051 12403232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12404013 12404161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12405172 12405265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12408990 12409113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12410886 12410963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12411461 12411601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12414178 12414284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12418637 12418782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12418966 12419127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2439 nt):
ATGGACCATAAGGAAGTAATCCTTCTGTTTCTCTTGCTTCTGAAACCAGGACAAGGGGACTCGCTGGATG
GCTACATAAGCACACAAGGGGCTTCACTGTTCAGTCTCACCAAGAAGCAGCTCGCAGCAGGAGGTGTCTC
GGACTGTTTGGCCAAATGTGAAGGGGAAACAGACTTTGTCTGCAGGTCATTCCAGTACCACAGCAAAGAG
CAGCAATGCGTGATCATGGCGGAGAACAGCAAGACTTCCTCCATCATCCGGATGAGAGACGTCATCTTAT
TCGAAAAGAGAGTGTATCTGTCAGAATGTAAGACCGGCATCGGCAACGGCTACAGAGGAACCATGTCCAG
GACAAAGAGTGGTGTTGCCTGTCAAAAGTGGGGTGCCACGTTCCCCCACGTACCCAACTACTCTCCCAGT
ACACATCCCAATGAGGGACTAGAAGAGAACTACTGTAGGAACCCAGACAATGATGAACAAGGGCCTTGGT
GCTACACTACAGATCCGGACAAGAGATATGACTACTGCAACATTCCTGAATGTGAAGAGGAATGCATGTA
CTGCAGTGGAGAAAAGTATGAGGGCAAAATCTCCAAGACCATGTCTGGACTTGACTGCCAGGCCTGGGAT
TCTCAGAGCCCACATGCTCATGGATACATCCCTGCCAAATTTCCAAGCAAGAACCTGAAGATGAATTATT
GCCGCAACCCTGACGGGGAGCCAAGGCCCTGGTGCTTCACAACAGACCCCACCAAACGCTGGGAATACTG
TGACATCCCCCGCTGCACAACACCCCCGCCCCCACCCAGCCCAACCTACCAATGTCTGAAAGGAAGAGGT
GAAAATTACCGAGGGACCGTGTCTGTCACCGTGTCTGGGAAAACCTGTCAGCGCTGGAGTGAGCAAACCC
CTCATAGGCACAACAGGACACCAGAAAATTTCCCCTGCAAAAATCTGGAAGAGAACTACTGCCGGAACCC
AGATGGAGAAACTGCTCCCTGGTGCTATACCACTGACAGCCAGCTGAGGTGGGAGTACTGTGAGATTCCA
TCCTGCGAGTCCTCAGCATCACCAGACCAGTCAGATTCCTCAGTTCCACCAGAGGAGCAAACACCTGTGG
TCCAGGAATGCTACCAGAGCGATGGGCAGAGCTATCGGGGTACATCGTCCACTACCATCACAGGGAAGAA
GTGCCAGTCCTGGGCAGCTATGTTTCCACACAGGCATTCGAAGACCCCAGAGAACTTCCCAGATGCTGGC
TTGGAGATGAACTACTGCAGGAACCCGGATGGTGACAAGGGCCCTTGGTGCTACACCACTGACCCGAGCG
TCAGGTGGGAATACTGCAACCTGAAGCGGTGCTCAGAGACAGGAGGGAGTGTTGTGGAATTGCCCACAGT
TTCCCAGGAACCAAGTGGGCCGAGCGACTCTGAGACAGACTGCATGTATGGGAATGGCAAAGACTATCGG
GGCAAAACGGCCGTCACTGCAGCTGGCACCCCCTGCCAGGGATGGGCTGCCCAGGAGCCCCACAGGCACA
GCATCTTCACCCCACAGACAAACCCACGGGCAGGTCTGGAAAAGAACTACTGCCGAAACCCAGATGGGGA
TGTGAATGGTCCTTGGTGCTATACAACAAACCCCAGAAAACTTTATGACTATTGTGACATCCCCCTGTGT
GCATCAGCATCATCCTTTGAGTGCGGGAAACCTCAGGTGGAACCGAAGAAATGCCCTGGGAGGGTGGTGG
GTGGCTGCGTGGCCAACCCTCACTCCTGGCCCTGGCAAATCAGCCTTAGAACAAGATTTACCGGACAGCA
CTTCTGTGGCGGTACTTTAATAGCCCCAGAGTGGGTTCTGACTGCTGCCCACTGTTTGGAGAAATCTTCA
AGACCTGAATTCTACAAGGTTATCCTGGGTGCGCACGAAGAATATATCCGTGGGTTGGATGTTCAGGAAA
TATCAGTAGCCAAACTGATCTTGGAGCCCAACAACCGTGACATTGCCCTGCTGAAACTAAGCCGCCCAGC
CACCATCACGGATAAAGTCATTCCAGCTTGTCTGCCATCTCCAAATTACATGGTTGCTGACCGGACAATA
TGTTACATCACCGGCTGGGGAGAGACTCAAGGGACTTTCGGTGCCGGTCGTCTCAAGGAGGCTCAGCTGC
CTGTGATTGAGAACAAGGTGTGCAACCGCGTCGAGTATCTGAACAACAGAGTCAAATCCACGGAGCTCTG
TGCCGGGCAACTGGCTGGTGGCGTCGACAGCTGCCAGGGCGACAGTGGAGGACCTCTGGTTTGCTTCGAG
AAGGACAAGTACATTTTACAAGGAGTCACTTCTTGGGGTCTTGGCTGTGCTCGCCCCAATAAGCCTGGTG
TCTACGTTCGTGTCTCACGGTTTGTTGATTGGATTGAAAGGGAGATGAGGAATAACTGA

Translation (812 aa):
MDHKEVILLFLLLLKPGQGDSLDGYISTQGASLFSLTKKQLAAGGVSDCLAKCEGETDFVCRSFQYHSKE
QQCVIMAENSKTSSIIRMRDVILFEKRVYLSECKTGIGNGYRGTMSRTKSGVACQKWGATFPHVPNYSPS
THPNEGLEENYCRNPDNDEQGPWCYTTDPDKRYDYCNIPECEEECMYCSGEKYEGKISKTMSGLDCQAWD
SQSPHAHGYIPAKFPSKNLKMNYCRNPDGEPRPWCFTTDPTKRWEYCDIPRCTTPPPPPSPTYQCLKGRG
ENYRGTVSVTVSGKTCQRWSEQTPHRHNRTPENFPCKNLEENYCRNPDGETAPWCYTTDSQLRWEYCEIP
SCESSASPDQSDSSVPPEEQTPVVQECYQSDGQSYRGTSSTTITGKKCQSWAAMFPHRHSKTPENFPDAG
LEMNYCRNPDGDKGPWCYTTDPSVRWEYCNLKRCSETGGSVVELPTVSQEPSGPSDSETDCMYGNGKDYR
GKTAVTAAGTPCQGWAAQEPHRHSIFTPQTNPRAGLEKNYCRNPDGDVNGPWCYTTNPRKLYDYCDIPLC
ASASSFECGKPQVEPKKCPGRVVGGCVANPHSWPWQISLRTRFTGQHFCGGTLIAPEWVLTAAHCLEKSS
RPEFYKVILGAHEEYIRGLDVQEISVAKLILEPNNRDIALLKLSRPATITDKVIPACLPSPNYMVADRTI
CYITGWGETQGTFGAGRLKEAQLPVIENKVCNRVEYLNNRVKSTELCAGQLAGGVDSCQGDSGGPLVCFE
KDKYILQGVTSWGLGCARPNKPGVYVRVSRFVDWIEREMRNN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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