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Report for CCDS17202.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17202.1 Public Mus musculus 2 Ppdpf 23 108 98 CCDS HistoryNCBI Gene:66496Re-query CCDS DB by CCDS ID:17202.1Re-query CCDS DB by GeneID:66496See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17202.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000016488.12 ENSMUSP00000016488.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000016488.12Link to Ensembl Protein Viewer:ENSMUSP00000016488.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000016488Re-query CCDS DB by Protein ID:ENSMUSP00000016488
Original member Current member EBI ENSMUST00000108841.1 ENSMUSP00000104469.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108841.1Link to Ensembl Protein Viewer:ENSMUSP00000104469.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108841Re-query CCDS DB by Protein ID:ENSMUSP00000104469
Original member NCBI NM_001356427.1 NP_001343356.1 Updated not alive Link to Nucleotide Sequence:NM_001356427.1Link to Protein Sequence:NP_001343356.1Re-query CCDS DB by Nucleotide ID:NM_001356427Re-query CCDS DB by Protein ID:NP_001343356
Current member NCBI NM_001356427.2 NP_001343356.1 Accepted alive Link to Nucleotide Sequence:NM_001356427.2Link to Protein Sequence:NP_001343356.1Re-query CCDS DB by Nucleotide ID:NM_001356427Re-query CCDS DB by Protein ID:NP_001343356Link to BLAST:NP_001343356.1
Original member NCBI NM_025598.3 NP_079874.1 Updated not alive Link to Nucleotide Sequence:NM_025598.3Link to Protein Sequence:NP_079874.1Re-query CCDS DB by Nucleotide ID:NM_025598Re-query CCDS DB by Protein ID:NP_079874
Current member NCBI NM_025598.4 NP_079874.1 Accepted alive Link to Nucleotide Sequence:NM_025598.4Link to Protein Sequence:NP_079874.1Re-query CCDS DB by Nucleotide ID:NM_025598Re-query CCDS DB by Protein ID:NP_079874Link to BLAST:NP_079874.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343356.1 115 Q9CR37 115 100% 0 0
NP_079874.1 115 Q9CR37 115 100% 0 0

Chromosomal Locations for CCDS 17202.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 181187682 181187736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181187809 181187886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181188004 181188100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181188182 181188299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (348 nt):
ATGGCAGCCATCCCTTCCAGCGGCTCGCTCGTGGCTACCCATGACTACTATCGGCGACGCCTGGGCTCCT
CGTCCAGCAGCAGCTCCGGCGGAAGTGCCGAGTACCCTGGGGACGCCGTGCTCCAGTCCCCGGGTCTTCC
CAAAGCCGACCCGGGCCACTGGTGGGCCAGCTTCTTTTTCGGGAAATCCACACTCCCGTTCATGACTACA
GTGTTGGAGTCTCCTGAGCGCTCGGCAGAATCCCCCCAGGTCTCCAGAAGCCCGATGACCTGTGGCCTGA
CTCCTGAAACCATGAAGCAGCAGCCAGTCATCCATTCTGGCCAGACCAACCCCAGGGACCTTTCCTGA

Translation (115 aa):
MAAIPSSGSLVATHDYYRRRLGSSSSSSSGGSAEYPGDAVLQSPGLPKADPGHWWASFFFGKSTLPFMTT
VLESPERSAESPQVSRSPMTCGLTPETMKQQPVIHSGQTNPRDLS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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