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Report for CCDS24983.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24983.1 Public Mus musculus 11 Slc13a5 23 108 98 CCDS HistoryNCBI Gene:237831Re-query CCDS DB by CCDS ID:24983.1Re-query CCDS DB by GeneID:237831See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24983.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021161.13 ENSMUSP00000021161.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021161.13Link to Ensembl Protein Viewer:ENSMUSP00000021161.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000021161Re-query CCDS DB by Protein ID:ENSMUSP00000021161
Original member NCBI NM_001004148.4 NP_001004148.1 Updated not alive Link to Nucleotide Sequence:NM_001004148.4Link to Protein Sequence:NP_001004148.1Re-query CCDS DB by Nucleotide ID:NM_001004148Re-query CCDS DB by Protein ID:NP_001004148
Current member NCBI NM_001004148.5 NP_001004148.1 Accepted alive Link to Nucleotide Sequence:NM_001004148.5Link to Protein Sequence:NP_001004148.1Re-query CCDS DB by Nucleotide ID:NM_001004148Re-query CCDS DB by Protein ID:NP_001004148Link to BLAST:NP_001004148.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001004148.1 572 Q67BT3 572 100% 0 0

Chromosomal Locations for CCDS 24983.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 72243505 72243636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72245126 72245263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72247667 72247828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72250726 72250844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72252258 72252358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72253184 72253402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72257360 72257482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72258958 72259126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72260195 72260382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72261613 72261749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72262023 72262151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72266464 72266565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1719 nt):
ATGGATTCGGCGAAGACTTGTGTGACCAAGTTCAAGTCCTTTGCGATTTTGCTCTTCACCCCGATCCTGA
TGCTTCCACTCGTCATTCTGATACCTGACAAGTTTGCCAGGTGTGCCTATGTTATAGTCATTATGGCTGT
CTACTGGTGCACAGATGTCATCCCAGTGGCTGTTACCTCCCTCCTGCCTGTCTTACTCTTCCCACTTTTG
AAGGTTCTGGACTCCAAGCAGGTATGTATCCAATACATGAAGGACACCAACATGCTGTTCCTGGGCAGTC
TCATTGTGGCTGTGGCTGTGGAACGCTGGAAACTTCATAAGAGGGTTGCCCTGAGAATGCTGCTCTTTGT
GGGGACCAAGCCCTCACGGCTGATGCTGGGCTTTATGTTTGTCACGGCCTTCCTGTCCATGTGGATCAGC
AATACTGCCGCCACAGCCATGATGATACCCATTGTGGAGGCCATGCTGCAGCAAATGATAGCCGCCAATA
CAGCTGTGGAGGCCAGCCTGGGGACACTGGAGCTGCTGGACAAGAACAAGACCAGCGAGTTGCCAGGAAG
CCAGGTGGTATTTGAAGACCCCAATGTGCAGGAGCAGGAAGACGAAGAAACAAAGAATATGTACAAGGCT
ATGCACCTATGTGTTTGCTATTCAGCCAGCATTGGGGGTACAGCCACCTTGACCGGGACGGGACCCAACG
TGGTGCTCCTGGGCCAGATGCAGGAATTGTTTCCTGACAGTAAAGATGTCCTGAACTATGCATCTTGGTT
TGGATTTGCCTTCCCCAACATGGTGATGATGCTGGTGCTGGCCTGGCTGTGGCTCCAGTGCTTGTACATG
AGACACAATTTAAAAAAAACTTGCATCTGCTGTGGGGAGAAGAAGAGGGACACCGAGAAGATTGCCTACA
AAGTGCTGAACGAGGAGTACCAGAAGCTGGGGTCCTTGAGCTACCCTGAATGCAACGTGCTCTTTTGCTT
CACCCTACTTGTCATCCTGTGGTTCTCCCGAGACCCCGGCTTCATGCCTGGCTGGCTGTCATTCGCCTGG
GTCGAGGGAAACACCGTTCATATCACAGATGCCACAGTGGCCATCTTTGTGGCCATTTTGCTTTTCATCA
TACCTTCACAAAAGCCCAAGTTCAACTTCAGCAGCCAGACTGAGGAAGAAAGGAAAACTCCGTTCTACCC
CCCAGCACTGCTGGATTGGAAAGTCGCCCAAGAGAAAGTGCCCTGGGACATCGTGCTGCTCCTGGGGGGA
GGGTTTGCTATGGCAAAAGGATGTGAGACGTCAGGGCTCTCGAAGTGGATGGCAGCACAGATGGAACCCT
TGAGATTAGTGAAACCTGCTGTCATTACCTTGATCTTGTCCTGTCTTGTTGCAATGACCACAGAGTGCAC
AAGTAACGTGGCCACTACCACCCTGTTCCTGCCTATCTTTGCCTCCATGGCTCGTTCCATTGGTATCCAT
CCTCTGTATGTCATGATTCCCTGTACCATGAGTGCTTCACTTGCCTTCATGTTGCCTGTGGCCACCCCAC
CGAATGCCATCGTGTTTGCCTACGGACACCTCAGAGTTGTTGACATGATGAAAACAGGATTGATAATGAA
CTTCGTTGGAATCCTATCTGTGTTTCTGTCAGTCAACACCTGGGGTCGGGCTATGTTTAACTTGGATAAC
TTCCCCGACTGGGCAAATTCAACAAGTGTTAACACTTAG

Translation (572 aa):
MDSAKTCVTKFKSFAILLFTPILMLPLVILIPDKFARCAYVIVIMAVYWCTDVIPVAVTSLLPVLLFPLL
KVLDSKQVCIQYMKDTNMLFLGSLIVAVAVERWKLHKRVALRMLLFVGTKPSRLMLGFMFVTAFLSMWIS
NTAATAMMIPIVEAMLQQMIAANTAVEASLGTLELLDKNKTSELPGSQVVFEDPNVQEQEDEETKNMYKA
MHLCVCYSASIGGTATLTGTGPNVVLLGQMQELFPDSKDVLNYASWFGFAFPNMVMMLVLAWLWLQCLYM
RHNLKKTCICCGEKKRDTEKIAYKVLNEEYQKLGSLSYPECNVLFCFTLLVILWFSRDPGFMPGWLSFAW
VEGNTVHITDATVAIFVAILLFIIPSQKPKFNFSSQTEEERKTPFYPPALLDWKVAQEKVPWDIVLLLGG
GFAMAKGCETSGLSKWMAAQMEPLRLVKPAVITLILSCLVAMTTECTSNVATTTLFLPIFASMARSIGIH
PLYVMIPCTMSASLAFMLPVATPPNAIVFAYGHLRVVDMMKTGLIMNFVGILSVFLSVNTWGRAMFNLDN
FPDWANSTSVNT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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