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Report for CCDS29997.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29997.1 Public Mus musculus X Ssxb1 23 108 98 CCDS HistoryNCBI Gene:67985Re-query CCDS DB by CCDS ID:29997.1Re-query CCDS DB by GeneID:67985See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29997.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037297.3 ENSMUSP00000037624.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037297.3Link to Ensembl Protein Viewer:ENSMUSP00000037624.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000037297Re-query CCDS DB by Protein ID:ENSMUSP00000037624
Original member NCBI NM_026492.3 NP_080768.1 Updated not alive Link to Nucleotide Sequence:NM_026492.3Link to Protein Sequence:NP_080768.1Re-query CCDS DB by Nucleotide ID:NM_026492Re-query CCDS DB by Protein ID:NP_080768
Current member NCBI NM_026492.4 NP_080768.1 Accepted alive Link to Nucleotide Sequence:NM_026492.4Link to Protein Sequence:NP_080768.1Re-query CCDS DB by Nucleotide ID:NM_026492Re-query CCDS DB by Protein ID:NP_080768Link to BLAST:NP_080768.1

Chromosomal Locations for CCDS 29997.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 8415930 8415998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8416454 8416568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8416872 8416961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8417437 8417486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8418092 8418167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8421461 8421573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (513 nt):
ATGGAAACAGTGAGTTCCTGTGAAAAGGTCCCCATGGAAGTGCTTTATGAACCAAAGAATATCTGCAAGG
CATTCCAGGATATTTCTACATACTTCTCTGATGAAGAGTGGGGAAAGCTGACTCAATGGCAGAAAAGTGC
CTACGTGTACATGAAAAGAAACTACATCAGAATGACTGACCTAGGGGTCACCGTGAACCAACCAGTTTTC
ATGCGCGGCAAGGAGCAGGCCAAGCAATCCCTGGTCGAAGGCATTGAAGTTCATGACAGTGAAGATGAAT
GCTTTGAAGGATCTTTTGGTGTGACACCGATAAAACGAATGAAGCTGACATCAGTGACAATAAGTTTTCA
TAATGTAGAAGGAAGCCTTGCATCTGGAGAGAATGATTGCAACTTGGCAGAAACTGGTGGCATTCAGGTC
AATGTTTGGAGCCACCGGCTGCGAGAGAGGAAGTATCGAGTGATATATTCAGAGATTAGTGATACTGAAG
AGGAAGAAGATGATGATTACTGA

Translation (170 aa):
METVSSCEKVPMEVLYEPKNICKAFQDISTYFSDEEWGKLTQWQKSAYVYMKRNYIRMTDLGVTVNQPVF
MRGKEQAKQSLVEGIEVHDSEDECFEGSFGVTPIKRMKLTSVTISFHNVEGSLASGENDCNLAETGGIQV
NVWSHRLRERKYRVIYSEISDTEEEEDDDY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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