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Report for CCDS25608.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25608.1 Public Mus musculus 11 Ttyh2 23 108 98 CCDS HistoryNCBI Gene:117160Re-query CCDS DB by CCDS ID:25608.1Re-query CCDS DB by GeneID:117160See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25608.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045779.5 ENSMUSP00000037821.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045779.5Link to Ensembl Protein Viewer:ENSMUSP00000037821.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000045779Re-query CCDS DB by Protein ID:ENSMUSP00000037821
Original member Current member NCBI NM_053273.2 NP_444503.2 Accepted alive Link to Nucleotide Sequence:NM_053273.2Link to Protein Sequence:NP_444503.2Re-query CCDS DB by Nucleotide ID:NM_053273Re-query CCDS DB by Protein ID:NP_444503Link to BLAST:NP_444503.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444503.2 532 Q3TH73-1 532 100% 0 0

Chromosomal Locations for CCDS 25608.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 114675544 114675672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 114686394 114686566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 114690239 114690350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 114696589 114696809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 114701781 114701876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 114702236 114702308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 114707336 114707405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 114707679 114707734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 114708417 114708509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 114708769 114708861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 114710043 114710185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 114710811 114710996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 114711760 114711838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 114719129 114719203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1599 nt):
ATGCCGGCGGCGCGAGTGGAGTACATCGCGCCCTGGTGGGTCGTGTGGCTGCACAGCGTTCCGCACCTCG
GCCTGCGCCTGCAGCGAGTAGACAGCACCTTCAGCCCCGGCGACGAAACTTACCAGGAGTCGCTGCTCTT
CCTGGGGGTGTTGGCTGCCATTGGCCTGGGCCTGAATCTCATCTTCCTCACCGTCTACCTGGTGTGCACA
TGCTGCTGCCGGCGGGACCACACGGTGCAGACCAAGCAGCAGGAATCATGCTGCGTGACCTGGACGGCGG
TGGTGGCTGGGCTCCTCTGCTGTGCTGCGGTGGGCGTTGGTTTCTATGGAAACAGCGAGACCAACGATGG
GATGCATCAGCTGATCTACTCCCTGGACAACGCGAACCACACCTTCTCTGGAATGGATGAGCTGGTGTCT
GCAAACACCCAGAGGATGAAGGTAGACCTAGAACAGCACCTGGCCCGGCTCAGCGAGATCATTGCTGCCC
GGGGTGACTACATCCAGACCCTGAAGTTTATGCAACAGATGGCAGGCAATGTCGTCAGCCAGCTCTCGGG
GCTGCCCGTGTGGAGGGAGGTCACCACGCAGCTGACCAAGCTGTCCCACCAGACTGCCTATGTGGAATAC
TACAGGTGGCTGTCCTACCTCCTGCTTTTCATCCTTGACCTGGTCATCTGCCTTGTCACCTGCCTGGGAC
TGGCCAGGCGGTCCAAGTGTCTCCTAGCCTCCATGCTGTGCTGTGGAATACTGACCCTGATCCTCAGCTG
GGCTTCTCTGGCTGCTGATGCTGCTGCAGCAGTGGGCACCAGTGACTTCTGCATGGCTCCTGACATCTAC
ATCCTGAACAACACAGGGAGCCAGATCAACTCAGAGGTGACCCGGTACTACCTCCATTGCAGTCAGAGCC
TAATCAGCCCGTTCCAGCAGTCACTGACCACCTTCCAGCGCTCATTGACCACCATGCAGATCCAGGTTGG
AGGCCTGCTGCAGTTTGCCGTGCCCCTCTTCCCTACAGCAGAGAAAGACCTTCTTGGCATCCAGCTTCTG
CTAAACAACTCCGAGATCAGCCTGCACCAGTTGACCGCCATGTTGGATTGCCGAGGGCTGCACAAGGACT
ACCTAGACGCCCTCACTGGCATCTGCTATGATGGCATTGAGGGCCTGCTCTTCCTTGGTCTCTTCTCCCT
CTTGGCTGCCCTGGCTTTCTCCACCCTGACCTGTGCCGGACCTCGTGCCTGGAAATACTTCATCAACAGG
GACAGAGATTATGATGACATCGACGACGATGACCCTTTCAACCCCCAAGCTCGGCGCATCGCGGCCCATA
ACCCCACGAGGGGGCAACTGCACAGTTTCTGCAGCTACAGCAGCGGCCTTGGCAGCCAGTGCAGCCTTCA
GCCTCCCTCCCAGACCATCTCCAATGCCCCAGTCTCTGAGTACATGAACCAGGCCATACTCTTTGGTGGG
AACCCACGATACGAAAATGTGCCACTCATCGGGAGAGGTTCCCCTCCGCCCACATACTCTCCCAGCATGA
GACCCACCTACATGTCCGTGGCGGATGAACACCTGAGACACTACGAGTTCCCGTCCTAG

Translation (532 aa):
MPAARVEYIAPWWVVWLHSVPHLGLRLQRVDSTFSPGDETYQESLLFLGVLAAIGLGLNLIFLTVYLVCT
CCCRRDHTVQTKQQESCCVTWTAVVAGLLCCAAVGVGFYGNSETNDGMHQLIYSLDNANHTFSGMDELVS
ANTQRMKVDLEQHLARLSEIIAARGDYIQTLKFMQQMAGNVVSQLSGLPVWREVTTQLTKLSHQTAYVEY
YRWLSYLLLFILDLVICLVTCLGLARRSKCLLASMLCCGILTLILSWASLAADAAAAVGTSDFCMAPDIY
ILNNTGSQINSEVTRYYLHCSQSLISPFQQSLTTFQRSLTTMQIQVGGLLQFAVPLFPTAEKDLLGIQLL
LNNSEISLHQLTAMLDCRGLHKDYLDALTGICYDGIEGLLFLGLFSLLAALAFSTLTCAGPRAWKYFINR
DRDYDDIDDDDPFNPQARRIAAHNPTRGQLHSFCSYSSGLGSQCSLQPPSQTISNAPVSEYMNQAILFGG
NPRYENVPLIGRGSPPPTYSPSMRPTYMSVADEHLRHYEFPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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