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Report for CCDS21907.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21907.1 Public Mus musculus 7 Plekha1 23 108 98 CCDS HistoryNCBI Gene:101476Re-query CCDS DB by CCDS ID:21907.1Re-query CCDS DB by GeneID:101476See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21907.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048180.11 ENSMUSP00000035375.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048180.11Link to Ensembl Protein Viewer:ENSMUSP00000035375.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000048180Re-query CCDS DB by Protein ID:ENSMUSP00000035375
Original member Current member NCBI NM_133942.3 NP_598703.1 Accepted alive Link to Nucleotide Sequence:NM_133942.3Link to Protein Sequence:NP_598703.1Re-query CCDS DB by Nucleotide ID:NM_133942Re-query CCDS DB by Protein ID:NP_598703Link to BLAST:NP_598703.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598703.1 356 Q8BUL6-2 356 100% 0 0

Chromosomal Locations for CCDS 21907.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 130877754 130877894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130882330 130882386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130897325 130897450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130900517 130900660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130902177 130902245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130904870 130904934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130905391 130905454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130908336 130908425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130910832 130911146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1071 nt):
ATGCCTTATGTGGATCGACAGAATCGCATCTGTGGATTTCTAGACATTGAAGAAAATGAGAACAGTGGGA
AATTTCTTCGACGGTATTTCATCCTGGATACCAGAGAAGACAGCTTTGTATGGTACATGGATAATCCACA
GAACCTGCCTTCAGGATCGTCACGGGTTGGAGCCATTAAACTTACCTACATTTCAAAGGTACCAAAGCAG
TCAGACTCACAGCCGGCCTCCGACAGCCTGAGTCGCCAAGGTGACTGTGGTAAGAAGCAAGTGTCTTACA
GAACTGACATTGTTGGTGGTGTGCCCATCATCACGCCGACGCAGAAAGAAGAAGTAAACGAATGTGGTGA
GAGTCTGGATAGAAACAATTTGAAACGGTCACAGAGCCATCTTCCTTACTTTGCTCCTAAGCCACCTTCA
GACAGTGCAGTTATCAAAGCTGGGTATTGTGTGAAGCAAGGAGCGGTGATGAAAAACTGGAAGAGAAGAT
ATTTTCAATTGGATGAAAACACAATAGGCTACTTCAAATCTGAACTGGAGAAGGAACCTCTGCGGGTGAT
ACCACTTAAAGAAGTGCACAAAGTCCAGGAGTGCAAACAGAGTGACATAATGATGAGGGACAACCTGTTT
GAAATCGTGACGACATCTCGGACTTTCTATGTGCAGGCTGATAGCCCTGAAGAGATGCACAGTTGGATTA
AAGCAGTCTCTGGCGCCATCGTAGCACAGCGGGGACCTGGCAGGTCATCCTCTTCTGAGCATTCCGGCTG
GCCTTCAGAACCCAAATTCACTGTCCGTCCTGCCGGGGCCGCAGCCACCGCCTCACATTCCCCAGCCTCT
CGCAGCCACTCTCTGGTCTCAGGCTGTGCCATGGAGAAGCGAGGAGTTTACCAATCTCTTGCCAAGGTCA
AGCCAGGGAACTTCAAGGTCCAGACTGTCTCTCCAAGAGAGCCAGCTTCCAAAGTGACTGAACAGGCTTT
GCTCAGACCTCAGAGTAAAAACGGCCCTCAGGGAGAAGATGGCGAGCCAGTGGACTTAGATGACGCCAGC
CTGCCAGTCAGCGATGTGTGA

Translation (356 aa):
MPYVDRQNRICGFLDIEENENSGKFLRRYFILDTREDSFVWYMDNPQNLPSGSSRVGAIKLTYISKVPKQ
SDSQPASDSLSRQGDCGKKQVSYRTDIVGGVPIITPTQKEEVNECGESLDRNNLKRSQSHLPYFAPKPPS
DSAVIKAGYCVKQGAVMKNWKRRYFQLDENTIGYFKSELEKEPLRVIPLKEVHKVQECKQSDIMMRDNLF
EIVTTSRTFYVQADSPEEMHSWIKAVSGAIVAQRGPGRSSSSEHSGWPSEPKFTVRPAGAAATASHSPAS
RSHSLVSGCAMEKRGVYQSLAKVKPGNFKVQTVSPREPASKVTEQALLRPQSKNGPQGEDGEPVDLDDAS
LPVSDV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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