NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, December 17, 2024, starting at 8:00 a.m. EST for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS26064.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26064.1 Public Mus musculus 12 Ift43 23 108 98 CCDS HistoryNCBI Gene:76411Re-query CCDS DB by CCDS ID:26064.1Re-query CCDS DB by GeneID:76411See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26064.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054565.7 ENSMUSP00000061891.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054565.7Link to Ensembl Protein Viewer:ENSMUSP00000061891.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000054565Re-query CCDS DB by Protein ID:ENSMUSP00000061891
Original member Current member NCBI NM_029601.3 NP_083877.1 Accepted alive Link to Nucleotide Sequence:NM_029601.3Link to Protein Sequence:NP_083877.1Re-query CCDS DB by Nucleotide ID:NM_029601Re-query CCDS DB by Protein ID:NP_083877Link to BLAST:NP_083877.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083877.1 195 Q9DA69-2 195 100% 0 0

Chromosomal Locations for CCDS 26064.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 86082587 86082640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 86085094 86085186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 86111611 86111675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 86140052 86140095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 86161149 86161221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 86161452 86161527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 86161987 86162049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 86162178 86162297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (588 nt):
ATGGACGATTTACTGGACCTGGGCGAGGAGAGACGTCGCAGCTCGGCCACCTCCGGGGCCAAGATGGGAC
GCCGGGCTCATCAGGAGTCGACTCAGGCTGAGAATTACTTAAACAGCAAGAATTCTTCACTGACTCAGAC
TGGAGAGGCTCCCCCACCGAAACCACCTCGAAGGCAGGGAGGCTGGGCGGATGACTCCATGAAGATGGCG
AATCACCGCCTCCGACAGCAGAACCTGATGGGGTCAGACGACGACGATATTCCTGTGATCCCAGACCTGG
AAGATGTGCAGGAGGAAGACTTTGTGCTACAGGTGGCGTCTCCTCCAAGTATCCAGGTAAACCGAGTGAT
GACCTACCGTGACCTGGACAATGACCTCATGAAGTACTCGGCCTTTCAGACTTTGGATGGAGAAATTGAC
CTGAAACTCCTCACCAAAGTGCTGGCCCCAGAGCATGAAGTGCGAGAGGATGATGTGGGCTGGGACTGGG
ACCATCTGTACACCGAGGTGTCCTCAGAGCTCCTCACTGAGTGGGACCTGCTGCGGGCAGAGAAGGAGGA
TCCTGTGGGACCATCTAGGTACATCTGA

Translation (195 aa):
MDDLLDLGEERRRSSATSGAKMGRRAHQESTQAENYLNSKNSSLTQTGEAPPPKPPRRQGGWADDSMKMA
NHRLRQQNLMGSDDDDIPVIPDLEDVQEEDFVLQVASPPSIQVNRVMTYRDLDNDLMKYSAFQTLDGEID
LKLLTKVLAPEHEVREDDVGWDWDHLYTEVSSELLTEWDLLRAEKEDPVGPSRYI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH