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Report for CCDS20554.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20554.1 Public Mus musculus 6 Kcna5 23 108 98 CCDS HistoryNCBI Gene:16493Re-query CCDS DB by CCDS ID:20554.1Re-query CCDS DB by GeneID:16493See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20554.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060972.4 ENSMUSP00000055673.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060972.4Link to Ensembl Protein Viewer:ENSMUSP00000055673.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000060972Re-query CCDS DB by Protein ID:ENSMUSP00000055673
Original member Current member NCBI NM_145983.2 NP_666095.1 Accepted alive Link to Nucleotide Sequence:NM_145983.2Link to Protein Sequence:NP_666095.1Re-query CCDS DB by Nucleotide ID:NM_145983Re-query CCDS DB by Protein ID:NP_666095Link to BLAST:NP_666095.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666095.1 602 Q61762-1 602 100% 0 0

Chromosomal Locations for CCDS 20554.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 126533355 126535163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1809 nt):
ATGGAGATCTCCCTGGTGCCCATGGAGAACGGCAGTGCCATGACCCTCAGAGGAGGAGGGGAGGCAGGGG
CAAGCTGTGTGCAGAGCCCCAGGGGAGAGTGTGGGTGCCCTCCGACGGCTGGACTCAATAATCAGTCCAA
AGAAACATCACCGAGGAGGCGCGCCACACACGAGGATGCGGGCCAGGGTGGGAGGCCTTTGCCCCCTATG
CCTCAGGAGCTGCCACAGCCTAGAAGGCCATCTGCTGAGGATGAGGAGGGAGAAGGCGACCCTGGCCTGG
GCACAGTGGAGGAGGACCAGGCTCCTCAGGACTCAGGATCACTCCATCACCAGCGGGTCCTCATAAACAT
CTCGGGTTTGCGCTTTGAGACGCAGCTGGGCACCCTGGCGCAGTTTCCCAACACCCTCCTGGGGGACCCA
GTCAAACGCCTGCGCTACTTCGATCCCTTGAGAAATGAGTACTTCTTCGACCGCAACCGGCCTAGCTTCG
ATGGCATTTTGTACTACTACCAGTCTGGGGGCCGCCTGCGCAGGCCGGTCAATGTCTCCCTGGATGTGTT
TGCAGATGAGATCCGCTTTTACCAGCTGGGGGACGAGGCCATGGAGCGCTTCCGGGAGGATGAAGGCTTC
ATCAAGGAAGAGGAGAAGCCCCTGCCCCGCAATGAGTTCCAGCGCCAGGTGTGGCTTATCTTCGAATACC
CAGAAAGCTCTGGGTCAGCAAGAGCCATTGCCATCGTGTCGGTCTTGGTCATTCTCATCTCTATCATCAC
CTTCTGCTTGGAGACTCTGCCTGAGTTCAGGGATGAACGGGAGCTGTTACGCCACCCCCCAGTGCCGCCG
CAGCCCCCAGCCCCTGCCCCAGGGGCAAATGGCAGTGGCTCTGGTGTCCTTTCCTCTGGCCCCACAGTGG
CTCCGCTCCTGCCTAGGACACTGGCTGACCCATTCTTCATCGTGGAGACCACATGTGTGATCTGGTTCAC
TTTTGAGCTGCTTGTGCGTTTCTTTGCTTGCCCCAGCAAGGCAGAATTCTCTCGGAATATTATGAACATC
ATTGATATTGTGGCCATCTTCCCCTACTTTATCACCCTGGGCACCGAGCTGGCAGAGCAACAACCAGGGG
GTGGTGGTCAGAATGGGCAGCAGGCCATGTCCCTAGCCATCCTCAGGGTGATCCGCCTGGTCCGGGTGTT
CCGAATCTTCAAGCTCTCCCGCCACTCCAAGGGACTGCAGATCCTGGGTAAGACCTTACAGGCGTCCATG
CGGGAGCTCGGGCTGCTCATCTTCTTCCTCTTCATCGGAGTCATCCTCTTCTCCAGCGCTGTCTACTTCG
CAGAGGCAGACAATCAGGGGTCGCACTTCTCCAGTATCCCGGATGCATTCTGGTGGGCAGTAGTCACTAT
GACCACTGTAGGCTACGGGGACATGAGGCCCATCACTGTAGGGGGCAAGATTGTGGGCTCACTGTGCGCC
ATAGCTGGGGTCCTCACCATTGCTCTGCCTGTGCCCGTCATCGTCTCCAATTTTAATTACTTCTATCATC
GGGAGACAGACCACGAGGAGCAGGCTGCCCTGAAGGAAGAGCAAGGCATCCAGAGGCGGGAGTCTGGGCT
GGACACAGGAGGTCAACGGAAGGTCAGCTGCAGCAAGGCCTCCTTCTGCAAGACTGGGGGACCCCTGGAG
AGTACTGACAGTATCAGAAGGGGTAGCTGTCCTCTAGAAAAGTGTCACCTAAAGGCCAAGAGCAACGTGG
ACCTGCGAAGGTCTCTGTATGCCCTCTGTCTGGACACTAGCCGGGAAACAGATTTGTAA

Translation (602 aa):
MEISLVPMENGSAMTLRGGGEAGASCVQSPRGECGCPPTAGLNNQSKETSPRRRATHEDAGQGGRPLPPM
PQELPQPRRPSAEDEEGEGDPGLGTVEEDQAPQDSGSLHHQRVLINISGLRFETQLGTLAQFPNTLLGDP
VKRLRYFDPLRNEYFFDRNRPSFDGILYYYQSGGRLRRPVNVSLDVFADEIRFYQLGDEAMERFREDEGF
IKEEEKPLPRNEFQRQVWLIFEYPESSGSARAIAIVSVLVILISIITFCLETLPEFRDERELLRHPPVPP
QPPAPAPGANGSGSGVLSSGPTVAPLLPRTLADPFFIVETTCVIWFTFELLVRFFACPSKAEFSRNIMNI
IDIVAIFPYFITLGTELAEQQPGGGGQNGQQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGKTLQASM
RELGLLIFFLFIGVILFSSAVYFAEADNQGSHFSSIPDAFWWAVVTMTTVGYGDMRPITVGGKIVGSLCA
IAGVLTIALPVPVIVSNFNYFYHRETDHEEQAALKEEQGIQRRESGLDTGGQRKVSCSKASFCKTGGPLE
STDSIRRGSCPLEKCHLKAKSNVDLRRSLYALCLDTSRETDL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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