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Report for CCDS16233.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16233.1 Public Mus musculus 2 Or5m3 23 108 98 CCDS HistoryNCBI Gene:258572Re-query CCDS DB by CCDS ID:16233.1Re-query CCDS DB by GeneID:258572See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16233.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062166.1 ENSMUSP00000054494.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062166.1Link to Ensembl Protein Viewer:ENSMUSP00000054494.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000062166Re-query CCDS DB by Protein ID:ENSMUSP00000054494
Original member Current member EBI ENSMUST00000079298.4 ENSMUSP00000078279.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079298.4Link to Ensembl Protein Viewer:ENSMUSP00000078279.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000079298Re-query CCDS DB by Protein ID:ENSMUSP00000078279
Original member Current member EBI ENSMUST00000111589.2 ENSMUSP00000107216.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111589.2Link to Ensembl Protein Viewer:ENSMUSP00000107216.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000111589Re-query CCDS DB by Protein ID:ENSMUSP00000107216
Original member Current member NCBI NM_146579.2 NP_666790.2 Accepted alive Link to Nucleotide Sequence:NM_146579.2Link to Protein Sequence:NP_666790.2Re-query CCDS DB by Nucleotide ID:NM_146579Re-query CCDS DB by Protein ID:NP_666790Link to BLAST:NP_666790.2

Chromosomal Locations for CCDS 16233.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 86007778 86008710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGCTCAATTTCACAGATGTAACTGAATTTATTCTACTGGGCTTAACCAGCAGAAAGGAACTGCAAGTTC
TCTTCTTTGTCATCTTTCTCATGGTCTACATAGTTACCATGGTGGGCAACATTGGCATGATGATTTTAAT
TAAGATCAGTCCACAGCTCAGCAGCCCAATGTACTTTTTCCTGAGCCATTTGTCATTTGTTGATGTGTGG
TTTTCTTCCAATGTCACTCCTAAAATGCTAGAAAACTTATTGTCAAAGACAAAAACAATTTCTTATGCTG
GCTGCTTAGTACAGTGCTTCTTCTTCATTGCCCTTGTTCATGTGGAAATCTTCATTCTTGCTGTGATGGC
TTTTGACAGGTACATGGCAATTGGAAAGCCTCTGCTCTATGGCAGCAAAATGTCCAGGGTGGTTTGCATT
CGACTTATTTCTTTCCCCTACATATATGGGTTTCTGACTAGTCTGGCTGCAACCTTATGGACTTATGGCT
TGTACTTCTGTGGGAAAACTGAGATCAATCACTTCTACTGTGCAGATCCACCCCTTATCAAGATGGCCTG
TGCAGGGACCTTTGTGAAAGAATATACAATGATTATACTTGCAGGCATTAACTTCACATATTCACTTTCT
GTAGTCATCATCTCCTACCTGTTCATTCTCATTGCCATTCTCAGAATGCGCTCAGCAGAAGGCAGGCGCA
AGGCATTTTCCACCTGTGGGTCTCACCTCACAGCAGTTGTAATATTTTATGGCACTCTCATCTTCATGTA
CCTCAGACGACCCACTGAGGAGTCAGTGGAGCAAGGGAAGATGGTGGCTGTGTTCTACACCACCGTGATC
CCCATGTTGAACCCCATGATCTACAGTCTGAGGAACAAGGATGTCAAAGAAGCCATGGACAAAGTGATTA
GCCGAAAGGGCTTAACTAAGTAA

Translation (310 aa):
MLNFTDVTEFILLGLTSRKELQVLFFVIFLMVYIVTMVGNIGMMILIKISPQLSSPMYFFLSHLSFVDVW
FSSNVTPKMLENLLSKTKTISYAGCLVQCFFFIALVHVEIFILAVMAFDRYMAIGKPLLYGSKMSRVVCI
RLISFPYIYGFLTSLAATLWTYGLYFCGKTEINHFYCADPPLIKMACAGTFVKEYTMIILAGINFTYSLS
VVIISYLFILIAILRMRSAEGRRKAFSTCGSHLTAVVIFYGTLIFMYLRRPTEESVEQGKMVAVFYTTVI
PMLNPMIYSLRNKDVKEAMDKVISRKGLTK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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