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Report for CCDS37543.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37543.1 Public Mus musculus 17 Umodl1 23 108 98 CCDS HistoryNCBI Gene:52020Re-query CCDS DB by CCDS ID:37543.1Re-query CCDS DB by GeneID:52020See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37543.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066554.12 ENSMUSP00000067443.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066554.12Link to Ensembl Protein Viewer:ENSMUSP00000067443.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000066554Re-query CCDS DB by Protein ID:ENSMUSP00000067443
Original member Current member EBI ENSMUST00000114555.2 ENSMUSP00000110202.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114555.2Link to Ensembl Protein Viewer:ENSMUSP00000110202.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114555Re-query CCDS DB by Protein ID:ENSMUSP00000110202
Original member Current member NCBI NM_177465.4 NP_803416.2 Accepted alive Link to Nucleotide Sequence:NM_177465.4Link to Protein Sequence:NP_803416.2Re-query CCDS DB by Nucleotide ID:NM_177465Re-query CCDS DB by Protein ID:NP_803416Link to BLAST:NP_803416.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_803416.2 1348 Q5DID3-2 1348 100% 0 0

Chromosomal Locations for CCDS 37543.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 30954748 30954826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30959131 30959373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30966611 30966772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30968448 30968566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30971784 30971973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30973694 30973810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30980347 30980601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30982264 30982376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30983953 30984172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30984713 30984850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30986069 30986635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30987840 30988097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30989444 30989556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30992079 30992292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30994679 30994813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30996127 30996446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30998039 30998184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30998611 30998847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30999067 30999226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31002812 31002890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31008560 31008741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4047 nt):
ATGATGTCCAGGACCGTGAGGCTGGTCCTGTTGGCTTTGGCCTGTACTGTGGACCTGAGCCAGGCCAGTG
GC
TTTACAGAAAATGGCCTCTCCCTGCTGAGCTACCAGCTCTGCAGCTACCCGGTGACCCGAAGTGTCCA
G
AAGCTGCAGGCTGTGCAGACCTCTCACACAGCCTACGTGTACTGTGGAGGATGGATCCCCTGGAAAAAG
TGC
CCCAAGACTGTGTACCGGACCCAGTACCTAGCGATGGATGTCCCTGAGTCCAGGAATGTGACCGACT
GC
TGTGCGGGCTTTGAGCAGCTTGGCCTCTACTGCGTTCTGTCCCTGAACCGGTCCCGGGAGTTTGCATC
G
AGGCCCGGGGTCTGCCCGACTGCTGAAGCAGAGCCACTTAGCCCTTCATGCAGCTTGGACACAGACTGC
TCT
GGACTTCAGAAGTGCTGTTCCTGGCCAGGGGGCCGCCACTGTGTGTCCCCCACACCCACAGGTACAG
AG
AAGAGCATGGTGAGCTGGTACAACGTGACTGTGCTGGTGAAGGTGGGCTTCGAGGACCTGCAGCGAGA
G
GACCCTGGGCTCCGGAACCACACGCGCCTGCTCTACTCTTTGGTTACCAGTGCCTTGCAGCCTCTGAAC
CCA
GCTGTACACTACCTGACCTCGACTGGTGGCAAGGACACATTCACCACTGTGTCATGGCTACTGATGG
GC
TTTCCACGGCTCATGACGGTAGCCAATGTCTCCGTCATGTTGGATGACATGGTGAATCGGGTCTATGA
G
GTGGTCAGCATCCAGGTGCAAGACGTGAACGAGTGTCTTCACAGTGAGCTGCAAGCCTGCTCTGTAAGA
GAG
CAGTGTCGGAACCTGGAGGGCTCCTACCAATGTGTGTCTTCCCAGCGGCTGAACCACACAGATGAAG
AT
TGCCCTCCAATCCGAGATTTCGTGGCACTTAATGTCACCAGCAGCAGTTTCCATGTGTCCTGGAGTTT
G
AATTCCACTCAGAACTACAATTTCCACATTCAAGTGTACAAAGGCAAAGAGATACTCAGAAGCGCTTGG
ACA
AGGGGCCACACTATGGCTGTGTCTGACTTGGAGGCTGGAGTACTTTACAGAGTGAGGACTAGCTACC
TG
GGGTGCGGGGCCAATGTCTCTGCCACACTGGTTGTCAAGACAGATGCCCAGGTTTTCCAAGTCACAAT
A
CGGATCATGGACCGTAACCTGACAGAGCAGATTCTTGACTGCAGCAGCGGGGAATTCTGGAACTTTTCT
CGA
CAGCTGTTTCATGAGGTGCAAAACTCCTTCCCCCAAGCCATCTCTGACCTGTACAGACAAGGGAGGC
TG
AGGATGCAGATCGTGTCTCTGCAGGCAGGGAGTCTAGTGGTGACGCTTAGACTCACCCTGCAAGACCC
T
GACTTTTCAGTGGGGGTCCACACACTGACGCCTATGCTGCCCGTCCTGTCTGTGAGCAACGTGTTCCAG
GTT
GACCAGCAGAGGACATTCGTGCAAGACTGGGATGAGTGTGCACACAGCTCGGAGCATGACTGCCACC
CG
AGCGCACGCTGCATCAACCTGGAGGGCTCCTACACGTGCCAGTGCCTCACAGCCAGGGATGCCAGCCC
C
TCCAGGGCTGGCAGGGTCTGCGAGGGTGACATGGTGATCCCCACAGGAGATGAACTGTCTGTAACAACG
AAG
GTCACAGTCCCAGCTGCCAGTACGGGAATAACAACCTTTGGCCCAGAGACCCTCACCGAGTCACTAA
GT
TCCAAGCACCCAAGGAGCACCCCAGCAAGAAGTCAAACCTGGACCCCAGTGCCCCCATCAGTGAGAGA
T
GGGGGTAGCATAGTCAGGCAGGATAGGAATAGCACGGGACAAGGTATGGAGGTGCCCAACGTGACCCCA
AAC
CTGGGCAAAACCCACAGAAGTACCAGTGGGGTGACAAGCTCTGTTCCCTGGGCTCCAGGACAGACCC
AT
GGAACCCATCAGGGGACCACAGATGCCCCACTGCACACCACTCGAGAGTCACAGGAACTTATCACCAA
A
GATCCACCCTTCCTGACTGCTACAACCACGGGCTATGTTGTGTGGCACTCCAGTCCCACTTGGAAGACA
CCT
CCGAACTCCACAAGACTACAGAATGAAGACCCTCGATCTTCCTCCTTCCCAGGCCCGCCATCGGCCC
CA
ACCGATGTGACTCCAGAGTCCCCTGCCTGTGTTCCTGGACCCATTGGAAAGGTCACGGTCTCTAACGT
G
ACCAGTACCAGCTTCTCCCTCGAGTGGCCTGCAGACATCCGCCTCTCCCCTGCCTTCCACCTCACATTG
GTC
TCTCCTCGGGGTCCTGCCATGACCATGGAGACCCAGAACAATAATGTGACATTGTCAGGACTGGAAT
GG
GGAACCTTGTATCTGGTGGAGATTGTGGCTAAGGTGTGTGGGAAAGAAGGTGCCAGAACACAGCTGAA
A
GTGCGGACAGTGGCCCAGAAACTTGCCGGTAACGTCCGGATCACGAGCATGCAGTATTCGGAATCCTTC
CTC
AATACCAGCAGCAGGGAGCACCGAGAGTTCGTAGAGTTGTTCTTCAGAACGGTGCGGGACTCTCTGC
CA
GCCACGCTGCGTCAGCACATGGATGCAGGCAGGATCCGTGTGGACATCATTAACATCACAAATGGCAG
C
ATCGTGGTGGAGTTTAATCTGCTAATGACAGCAGACCTTGATGTCAGGGAGGTGTCTGCTGGCTTCCTC
AAT
GCCTTACAGAACACATCGATGCTGGAGGTGGTCAGAGGCAAAACTTTTATGCAAGATTACAACGAGT
GT
GACATGAAAGAGGATGACTGTGCCCCTGGGACATGCAGGAACACTTTCGGGTCTTTTACATGTAGCTG
T
GATGAGGGAGGACCTGACTCACAGGTGGAATATTCTGGAAGGTCCTGTGATGGTGACCCTTCTGGCAAC
ATG
ACCCAGACCCCAGGCTCAGAGTGGTCTCCTACCCCAGCAGGAACTAGGGGTGTCCCTGTGCCAATTG
CC
AGCTCCACAGCCCAGGACCTTCCCCTGCGGCTGAACCTGATGGACGCTGTTAGCGTGTCCTGTGAGAT
C
GAGACGGTGATCATCACCATCCAGAAGCGCTTTCTGCAGCAGGCGGCCATACCTGAGGCCTCCCTGTAC
CTG
GGAGAGCCATCCTGCAATGTGAGCAGAAGCAACAGCACACACGTGTTTCTGGTGGCTGGCTGGGGCG
AG
TGTGGGACCATCTTACAGAGTAACATGACCACCACAGTGGTGACGACCACGCTGAGGAACAACCTGTC
C
CCAGAGGGTGTCATCCACCACCCACAGTTCCTCAGTCCTATCCACTGTGCCTTCCAGAATGACGTTCTG
ACT
TCCTCGGGCTACACCCCACAGTGGGGGGTCTACACCGTCATCGAAGACCTCCACGGGACTGGAAATT
TT
GTCACAGAAATGCAGTTGTACATTGGCGATTCTCCCATACCTCAGAACTATAGCGTGTCCGCCAGCGA
T
GAGATCAAGATTGAGGTGGGGCTTCACAGGCAGAAGAGCAGTCTGAAGGTCGTGCTGACTGAGTGCTGG
GCC
ACCCCCTCCAGCAACGCCAAGGACCCCGTAACCTTCAGCTTCATCAACAACAGCTGCCCTGTTCCCA
AC
ACCTACACCAGCGTGATTCAGAATGGCCACTCCAGCAAGGCCCAGTTCAAGCTGAGAATCTTCTCCTT
C
ATCAACAACTCCATCGTCTACCTGCACTGCAAGCTGAGAGTGTGCATGGAGAACCCCAGGAACTCGTGC
AGG
ATAAGCTGCAACGACTTCCGGTCGCTGAGAAGTAGTGAAGCCTTGCACCAGATGACCTGGGGGCCCC
TC
CATCGGACTGAAGGTGCACAGGCATGTACAAAGCCAGTCCTGGGGACCGGTTACATCATTCTCCTAGC
G
GCAGCTGCACTTCTGGTAGTGGCAGGGGCCACAACCCTTCTGATCTTGCGTTACCAGAGAGTAAGGCAG
AAA
TACAATCTTCGGATCCAGACCGACGACTTCAGCTACCAGGTGTTCTCTCAATAG


Translation (1348 aa):
MMSRTVRLVLLALACTVDLSQASGFTENGLSLLSYQLCSYPVTRSVQKLQAVQTSHTAYVYCGGWIPWKK
C
PKTVYRTQYLAMDVPESRNVTDCCAGFEQLGLYCVL
SLNRSREFASRPGVCPTAEAEPLSPSCSLDTDC
S
GLQKCCSWPGGRHCVSPTPT
GTEKSMVSWYNVTVLVKVGFEDLQREDPGLRNHTRLLYSLVTSALQPLN
P
AVHYLTSTGGKDTFTTVSWLLMGFPRLMTVANVSVMLDDMVNRVYEVVSIQVQ
DVNECLHSELQACSVR
E
QCRNLEGSYQCVSSQRLNHTDE
DCPPIRDFVALNVTSSSFHVSWSLNSTQNYNFHIQVYKGKEILRSAW
T
RGHTMAVSDLEAGVLYRVRTSYLGCGANVSATLVVKT
DAQVFQVTIRIMDRNLTEQILDCSSGEFWNFS
R
QLFHE
VQNSFPQAISDLYRQGRLRMQIVSLQAGSLVVTLRLTLQDPDFSVGVHTLTPMLPVLSVSNVFQ
V
DQQRTFVQ
DWDECAHSSEHDCHPSARCINLEGSYTCQCLTARDASPSRAGRVCEGDMVIPTGDELSVTT
K
VTVPAASTGITTFGPETLTESLSSKHPRSTPARSQTWTPVPPSVRDGGSIVRQDRNSTGQGMEVPNVTP
N
LGKTHRSTSGVTSSVPWAPGQTHGTHQGTTDAPLHTTRESQELITKDPPFLTATTTGYVVWHSSPTWKT
P
PNSTRLQNEDPRSSSFPGPPSAPTDVTPESPAC
VPGPIGKVTVSNVTSTSFSLEWPADIRLSPAFHLTL
V
SPRGPAMTMETQNNNVTLSGLEWGTLYLVEIVAKVCGKEGARTQLKVRT
VAQKLAGNVRITSMQYSESF
L
NTSSREHREFVELFFRT
VRDSLPATLRQHMDAGRIRVDIINITNGSIVVEFNLLMTADLDVREVSAGFL
N
ALQNTSMLEVVRGKTFMQ
DYNECDMKEDDCAPGTCRNTFGSFTCSCDEGGPDSQVEYSGRSCDGDPSGN
M
TQTPGSEWSPTPAGTRGVPVPIASSTAQDLPLRLNLMDAVSVSCEIETVIITIQKRFLQQAAIPEASLY
L
GEPSCNVSRSNSTHVFLVAGWGECGTILQS
NMTTTVVTTTLRNNLSPEGVIHHPQFLSPIHCAFQNDVL
T
SSGYTPQW
GVYTVIEDLHGTGNFVTEMQLYIGDSPIPQNYSVSASDEIKIEVGLHRQKSSLKVVLTECW
A
TPSSNAKDPVTFSFINN
SCPVPNTYTSVIQNGHSSKAQFKLRIFSFINNSIVYLHCKLRVCMENPRNSC
R
I
SCNDFRSLRSSEALHQMTWGPLHRTEGAQACTKPVLGTGYIILLAAAALLVVAGATTLLILRYQRVRQ
K
YNLRIQTDDFSYQVFSQ




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser