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Report for CCDS35663.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35663.1 Public Mus musculus 1 Per2 23 108 98 CCDS HistoryNCBI Gene:18627Re-query CCDS DB by CCDS ID:35663.1Re-query CCDS DB by GeneID:18627See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35663.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069620.9 ENSMUSP00000066620.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069620.9Link to Ensembl Protein Viewer:ENSMUSP00000066620.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000069620Re-query CCDS DB by Protein ID:ENSMUSP00000066620
Original member NCBI NM_011066.3 NP_035196.2 Updated not alive Link to Nucleotide Sequence:NM_011066.3Link to Protein Sequence:NP_035196.2Re-query CCDS DB by Nucleotide ID:NM_011066Re-query CCDS DB by Protein ID:NP_035196
Current member NCBI NM_011066.4 NP_035196.2 Accepted alive Link to Nucleotide Sequence:NM_011066.4Link to Protein Sequence:NP_035196.2Re-query CCDS DB by Nucleotide ID:NM_011066Re-query CCDS DB by Protein ID:NP_035196Link to BLAST:NP_035196.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035196.2 1257 O54943 1257 99.8409% 0 2

Chromosomal Locations for CCDS 35663.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 91417871 91418020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91419375 91419525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91420406 91420598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91421368 91421554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91423690 91424486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91427739 91427978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91429384 91429548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91430774 91430880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91430978 91431140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91432808 91432892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91433396 91433521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91434622 91434730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91435017 91435170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91435650 91435756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91438334 91438412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91439887 91440029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91440832 91440883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91444585 91444786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91445501 91445622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91448708 91448862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91449813 91449878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91450605 91450825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3774 nt):
ATGAATGGATACGTGGACTTCTCCCCAAGTCCCACCAGTCCCACCAAGGAGCCAGGGGCACCTCAGCCCA
CCCAGGCTGTGCTCCAGGAAGACGTGGACATGAGCAGTGGCTCCAGCGGAAACGAGAACTGCTCCACGGG
ACGGGACTCTCAGGGCAGTGACTGCGACGACAATGGGAAGGAGCTGCGGATGCTCGTGGAATCTTCCAAC
ACTCACCCCAGCCCTGATGATGCCTTCAGACTCATGATGACAGAGGCAGAGCACAACCCCTCCACGAGCG
GCTGCAGTAGTGAGCAGTCTGCCAAAGCTGACGCACACAAAGAACTGATAAGGACCCTGAAGGAGCTGAA
GGTCCACCTCCCTGCAGACAAGAAGGCCAAGGGGAAGGCCAGCACGCTGGCAACCTTGAAGTATGCCCTG
CGGAGCGTGAAGCAGGTGAAGGCTAATGAGGAGTACTACCAGCTGCTAATGTCCAGTGAGAGCCAGCCCT
GCAGTGTGGATGTGCCTTCCTACAGCATGGAGCAGGTTGAGGGCATTACCTCCGAGTATATCGTGAAGAA
CGCGGATATGTTTGCTGTGGCTGTGTCCCTGGTTTCTGGGAAGATCCTGTACATCTCTAACCAAGTGGCC
TCCATCTTTCACTGTAAGAAGGACGCCTTCAGTGATGCCAAGTTTGTGGAGTTCCTGGCTCCTCATGACG
TCAGTGTGTTCCACAGCTACACCACCCCTTACAAGCTTCCGCCCTGGAGTGTGTGCAGCGGCTTAGATTC
TTTCACTCAGGAGTGCATGGAGGAGAAATCTTTTTTCTGCCGTGTCAGTGTTGGGAAACACCACGAGAAT
GAGATTCGCTACCAGCCCTTCCGCATGACACCCTACCTGGTCAAGGTGCAAGAGCAGCAGGGTGCTGAGA
GCCAGCTCTGCTGCCTGCTGCTGGCAGAGAGGGTACACTCGGGCTATGAAGCGCCTAGAATCCCTCCTGA
GAAGAGGATCTTCACAACAACCCACACACCAAACTGCTTGTTCCAGGCTGTGGATGAAAGGGCGGTCCCC
CTCCTGGGCTATCTACCTCAGGATCTGATCGAGACGCCTGTGCTCGTGCAGCTCCACCCCAGCGACCGGC
CCTTGATGCTCGCCATCCACAAGAAGATCCTACAGGCCGGTGGACAGCCTTTCGATTATTCTCCCATTCG
ATTCCGCACCCGCAACGGGGAGTACATCACACTGGACACTAGCTGGTCCAGCTTCATCAACCCGTGGAGC
AGGAAGATATCTTTCATCATTGGGAGGCACAAAGTCAGGGTAGGCCCTTTGAATGAGGATGTGTTCGCAG
CCTCCCCGTGCCCAGAGGAGAAGACTCCGCACCCCAGCGTTCAGGAGCTCACAGAACAAATCCACCGGCT
ACTGATGCAGCCTGTCCCCCACAGCGGCTCCAGTGGCTATGGGAGCCTGGGCAGTAACGGATCCCACGAA
CACCTCATGAGCCAGACATCATCCAGCGACAGCAATGGCCAAGAGGAGTCTCACCGGAGGAGATCCGGAA
TTTTTAAAACCAGTGGCAAGATTCAAACCAAAAGTCACGTTTCTCATGAGTCTGGAGGACAGAAGGAAGC
ATCTGTTGCAGAAATGCAAAGCAGCCCCCCAGCTCAGGTGAAAGCTGTCACCACCATAGAAAGGGACAGC
TCAGGGGCCAGCCTACCCAAGGCCAGCTTCCCAGAGGAACTAGCCTATAAGAACCAGCCTCCTTGCTCCT
ACCAGCAGATCAGCTGCCTGGACAGTGTCATCAGGTACCTGGAGAGCTGCAGCGAGGCAGCCACCCTGAA
AAGGAAGTGCGAGTTCCCAGCCAACATCCCATCCCGGAAGGCCACAGTCAGCCCCGGGCTGCACTCTGGA
GAGGCAGCGCGGCCCTCCAAGGTGACCAGCCACACAGAGGTCAGTGCTCACCTGAGCTCCCTGACGCTGC
CAGGCAAGGCCGAGAGTGTGGTGTCCCTCACCAGCCAGTGCAGCTACAGCAGCACCATCGTGCATGTGGG
CGACAAAAAGCCACAGCCCGAGCTAGAGACGGTAGAAGATATGGCCAGTGGGCCCGAGTCCCTGGATGGT
GCGGCCGGCGGCCTCAGCCAAGAAAAGGGGCCTCTTCAGAAGTTGGGCCTCACCAAGGAAGTTCTGGCTG
CACATACACAGAGAGAGGAGCAGGGCTTCCTGCAGAGGTTCAGGGAGGTGAGCAGGCTCAGTGCCCTGCA
GGCTCACTGCCAGAACTATCTCCAGGAGCGGTCCCGAGCCCAGGCGAGTGATCGAGGACTAAGAAATACT
TCTGGACTAGAGTCATCTTGGAAAAAAACTGGAAAGAACAGGAAACTGAAGTCAAAACGCGTCAAGACTC
GGGACTCTTCTGAGAGCACAGGGTCTGGAGGACCAGTGTCCCACCGACCTCCCCTCATGGGCCTGAATGC
CACAGCCTGGTCACCCTCCGACACATCCCAGTCCAGCTGCCCCTCTGCACCCTTCCCCACCGCAGTGCCA
GCTTACCCCCTACCTGTGTTCCAGGCACCCGGAATAGTATCCACACCAGGGACGGTGGTGGCGCCACCTG
CAGCCACCCACACTGGCTTCACCATGCCTGTTGTGCCTATGGGCACCCAGCCTGAATTCGCAGTGCAGCC
CCTGCCATTCGCTGCCCCTTTGGCTCCTGTCATGGCCTTCATGCTGCCCAGCTACCCGTTCCCACCAGCA
ACCCCAAACCTGCCTCAGGCCTTCCTCCCCAGCCAGCCTCACTTTCCAGCCCACCCCACACTTGCCTCCG
AAATAACTCCTGCCTCCCAGGCTGAGTTCCCTAGTCGGACCTCGACGCTCAGACAGCCGTGCGCTTGCCC
AGTCACCCCTCCAGCCGGCACAGTGGCCCTGGGCAGAGCCTCCCCACCGCTCTTCCAGTCCAGAGGCAGT
AGTCCCCTACAACTTAACCTGCTTCAGCTAGAGGAGGCGCCTGAAGGCAGCACTGGAGCCGCAGGGACCC
TGGGGACCACAGGGACAGCAGCTTCTGGTCTGGACTGCACATCTGGCACATCTCGGGATCGGCAGCCAAA
GGCACCTCCAACATGCAACGAGCCCTCAGACACTCAGAACAGTGATGCCATCTCCACGTCAAGTGACCTG
CTCAACCTCCTTCTGGGCGAGGACCTCTGCTCGGCCACTGGCTCAGCCCTGTCTAGAAGCGGGGCATCCG
CCACCTCAGACTCTCTGGGCTCCAGCTCGCTGGGCTTCGGCACATCCCAAAGTGGGGCAGGCAGTAGTGA
CACAAGTCACACCAGCAAATACTTTGGAAGCATTGACTCTTCAGAGAATAATCACAAAGCAAAAATGATC
CCAGACACGGAGGAAAGCGAGCAGTTCATTAAGTACGTCTTGCAGGACCCCATCTGGCTGCTGATGGCCA
ACACAGACGACAGCATCATGATGACATACCAGCTGCCCTCCCGGGATCTCCAGGCGGTGTTGAAGGAGGA
CCAGGAGAAGCTGAAGCTGCTGCAGAGGTCCCAGCCCCGGTTCACAGAGGGCCAGAGGCGAGAGCTCCGA
GAGGTTCATCCGTGGGTCCACACTGGGGGCCTGCCTACGGCCATCGATGTGACAGGCTGTGTTTACTGCG
AGAGTGAGGAGAAAGGCAACATTTGCCTGCCATATGAGGAAGACAGTCCTTCCCCGGGACTCTGTGATAC
CTCAGAAGCCAAAGAGGAGGAAGGTGAACAGCTGACAGGCCCCAGGATAGAGGCCCAGACGTAA

Translation (1257 aa):
MNGYVDFSPSPTSPTKEPGAPQPTQAVLQEDVDMSSGSSGNENCSTGRDSQGSDCDDNGKELRMLVESSN
THPSPDDAFRLMMTEAEHNPSTSGCSSEQSAKADAHKELIRTLKELKVHLPADKKAKGKASTLATLKYAL
RSVKQVKANEEYYQLLMSSESQPCSVDVPSYSMEQVEGITSEYIVKNADMFAVAVSLVSGKILYISNQVA
SIFHCKKDAFSDAKFVEFLAPHDVSVFHSYTTPYKLPPWSVCSGLDSFTQECMEEKSFFCRVSVGKHHEN
EIRYQPFRMTPYLVKVQEQQGAESQLCCLLLAERVHSGYEAPRIPPEKRIFTTTHTPNCLFQAVDERAVP
LLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQAGGQPFDYSPIRFRTRNGEYITLDTSWSSFINPWS
RKISFIIGRHKVRVGPLNEDVFAASPCPEEKTPHPSVQELTEQIHRLLMQPVPHSGSSGYGSLGSNGSHE
HLMSQTSSSDSNGQEESHRRRSGIFKTSGKIQTKSHVSHESGGQKEASVAEMQSSPPAQVKAVTTIERDS
SGASLPKASFPEELAYKNQPPCSYQQISCLDSVIRYLESCSEAATLKRKCEFPANIPSRKATVSPGLHSG
EAARPSKVTSHTEVSAHLSSLTLPGKAESVVSLTSQCSYSSTIVHVGDKKPQPELETVEDMASGPESLDG
AAGGLSQEKGPLQKLGLTKEVLAAHTQREEQGFLQRFREVSRLSALQAHCQNYLQERSRAQASDRGLRNT
SGLESSWKKTGKNRKLKSKRVKTRDSSESTGSGGPVSHRPPLMGLNATAWSPSDTSQSSCPSAPFPTAVP
AYPLPVFQAPGIVSTPGTVVAPPAATHTGFTMPVVPMGTQPEFAVQPLPFAAPLAPVMAFMLPSYPFPPA
TPNLPQAFLPSQPHFPAHPTLASEITPASQAEFPSRTSTLRQPCACPVTPPAGTVALGRASPPLFQSRGS
SPLQLNLLQLEEAPEGSTGAAGTLGTTGTAASGLDCTSGTSRDRQPKAPPTCNEPSDTQNSDAISTSSDL
LNLLLGEDLCSATGSALSRSGASATSDSLGSSSLGFGTSQSGAGSSDTSHTSKYFGSIDSSENNHKAKMI
PDTEESEQFIKYVLQDPIWLLMANTDDSIMMTYQLPSRDLQAVLKEDQEKLKLLQRSQPRFTEGQRRELR
EVHPWVHTGGLPTAIDVTGCVYCESEEKGNICLPYEEDSPSPGLCDTSEAKEEEGEQLTGPRIEAQT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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