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Report for CCDS26332.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26332.1 Public Mus musculus 13 Vmn1r217 23 108 98 CCDS HistoryNCBI Gene:171273Re-query CCDS DB by CCDS ID:26332.1Re-query CCDS DB by GeneID:171273See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26332.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091721.2 ENSMUSP00000089314.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091721.2Link to Ensembl Protein Viewer:ENSMUSP00000089314.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000091721Re-query CCDS DB by Protein ID:ENSMUSP00000089314
Original member Current member EBI ENSMUST00000227110.1 ENSMUSP00000154137.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227110.1Link to Ensembl Protein Viewer:ENSMUSP00000154137.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227110Re-query CCDS DB by Protein ID:ENSMUSP00000154137
Original member Current member EBI ENSMUST00000228656.1 ENSMUSP00000154563.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228656.1Link to Ensembl Protein Viewer:ENSMUSP00000154563.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228656Re-query CCDS DB by Protein ID:ENSMUSP00000154563
Original member Current member NCBI NM_134239.1 NP_599000.1 Accepted alive Link to Nucleotide Sequence:NM_134239.1Link to Protein Sequence:NP_599000.1Re-query CCDS DB by Nucleotide ID:NM_134239Re-query CCDS DB by Protein ID:NP_599000Link to BLAST:NP_599000.1

Chromosomal Locations for CCDS 26332.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 23113834 23114730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (897 nt):
ATGGTTTTGCAGTTTATTAAGGAAACAATTTTTCTCTTCATGACTATGGTTGGCATTCTGGGGAACATGT
CTGTTTCTGTGCATTATATGTTCAGTTGGTGGGGAAGCCCTGAGAAGAAACCCATACACCTTATTCTCAC
TCACTTGTCTTTTACAAACATCATACTTCTGCTTGCAAAAGGATTGCAAAAGACAATAACAGTTTTTGGT
TTAAGAAACTTCCTGGATGACATAGGCTGTAAGATCATTGTTTATCTGGAGAGGGTGGCCCGGGGCCTCT
CCATCTGCACCAGCAGTCTCCTCACTGTGGTCCAGGCCATCATCATCAGTCCCAGAGCATCTGGGTGGAG
CAGACTAAGGCCAAAGTCTGCATGGCACATCCTTCCATTCTTCTCATTCTTTTGGATACTCAATGGTTTA
ATAAGTATGAACCTAATCCATTCCATCACAAGTACAGGTCTGAATATGTCACAGCTTAACAACAGCAAGA
ACTATTGCTATTTTATGCCAGAAAGTCGAGAAATAAAATGGATTGTTCTCCCTCTCATGGTTCTGAGAGA
TGCAGTGTTTCAGGGTGCCATGGGAGGGGCCAGTGGCCACATGATATTTCTCCTCCACAAACACCACCAG
CATGTCCTCTACCTTCAGAACTCCAAGCTTCTCTACAGAACTCCTCCTGAGCTGAGAGCTGCCCAAAGTG
TCCTCCTTCTGATGCTCTGTTTTGTTTTCTTCTACTGGACTGATTGTGCTCTTTCCCTGTTTTTAAGTTT
GTCACTGGGAGACAGTTCCTTGATGATAAATATTCAAAAGGTTCTGACCCTTGGTTATGCAGTCTTCAGC
CCCCTTGTGCTGATTCACAGGGATGGGCTTCTGCCTGCATGTTGGCATGCTCAGTGA

Translation (298 aa):
MVLQFIKETIFLFMTMVGILGNMSVSVHYMFSWWGSPEKKPIHLILTHLSFTNIILLLAKGLQKTITVFG
LRNFLDDIGCKIIVYLERVARGLSICTSSLLTVVQAIIISPRASGWSRLRPKSAWHILPFFSFFWILNGL
ISMNLIHSITSTGLNMSQLNNSKNYCYFMPESREIKWIVLPLMVLRDAVFQGAMGGASGHMIFLLHKHHQ
HVLYLQNSKLLYRTPPELRAAQSVLLLMLCFVFFYWTDCALSLFLSLSLGDSSLMINIQKVLTLGYAVFS
PLVLIHRDGLLPACWHAQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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