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Report for CCDS51646.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51646.1 Public Mus musculus 5 Ccdc62 23 108 98 CCDS HistoryNCBI Gene:208908Re-query CCDS DB by CCDS ID:51646.1Re-query CCDS DB by GeneID:208908See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51646.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094320.9 ENSMUSP00000091878.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094320.9Link to Ensembl Protein Viewer:ENSMUSP00000091878.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000094320Re-query CCDS DB by Protein ID:ENSMUSP00000091878
Original member Current member EBI ENSMUST00000165148.3 ENSMUSP00000127483.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165148.3Link to Ensembl Protein Viewer:ENSMUSP00000127483.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165148Re-query CCDS DB by Protein ID:ENSMUSP00000127483
Original member Current member NCBI NM_001134767.1 NP_001128239.1 Accepted alive Link to Nucleotide Sequence:NM_001134767.1Link to Protein Sequence:NP_001128239.1Re-query CCDS DB by Nucleotide ID:NM_001134767Re-query CCDS DB by Protein ID:NP_001128239Link to BLAST:NP_001128239.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001128239.1 701 E9PVD1 701 100% 0 0

Chromosomal Locations for CCDS 51646.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 123930699 123930860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123934072 123934264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123936389 123936555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123938150 123938251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123944134 123944305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123946354 123946455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123951199 123951287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123951752 123951867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123954057 123954779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123957394 123957502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123961222 123961338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123966836 123966889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2106 nt):
ATGCGTAGCTCTGAGGGCGCGCCGTCCTGGGCTGTGGCTTTGCCCCCGCCGCTGCGGCCGTGCGCCTATG
GCGTCTCGGAGGTGACCCGCTGCTGGCACCAACTCTCTCTGGGGGCGGGGGAGTCATCCATGAACCCTTC
GGCGACCTTATACCGGCGCCAGAACATCGGATCAGAAGTTGAGACTTCCACTATTGAGAAGCAGCGGAAG
GAACTTCAGCTGCTCATCGGGGAGCTGAAAGACCGCGATAAGGAGCTCAATGACATGGTCGCAGTGCATC
AGAGGCAGCTTCTCTCCTGGGAAGAGGACCGGCAGAAAGTGCTGACCCTGGAGGAGCGCTGCAGCAAGCT
CGAAGGTGAGCTGCATAAAAGGACTGACATAATCAAGTCACTGATGAAGAAGGTCAAGACCCTGGAGTCC
AATCAAGCAGAGTGCCAGACAGCTCTTCAGAAGACGCAGCAGCAGCTCCAGGAGATGGCTCAGAAGGCCA
CACACTCCACCCTCCTCTCGGAAGACCTTGAGGCTAGAAATGAAAATCTCAGCAGCACGTTAGTGGACCT
CTCTGCTCAGGTAGGACAATTGCAAGCTAGAGAGCAGGCTCTCACTACCATGATAAAGCTAAAGGACAAA
GACATTATTGAGGCCGTCAATCACATTTCAGACTGCTCGGGTAAATTTAAATTGTTAGAGCACGCTTTAC
GTGATGCCAAGATGGCGGAGACGTGTGTGGTGAGAGAAAAGCAAGATTATAAGCAGAAATTGAAGGCACT
TAGGATTGAAGTCAATAAACTGAAAGAGGATCTAAATGAGAAGACAACAGAAAACAATGAACAACGAGAG
GAGATAATTCGACTCAAGCAAGAGAAAAGCTGTCTACATGATGAGCTAATTTTTACTGTTGAGAGGGAAA
AGAGGAAAGATGAATTACTTGATATTGCAAAGTCAAAGCAAGATCGTACAAATTCCGAGCTCCAGAATCT
GAGACAGATTTATGTAAAACAGCAGAGTGACCTGCAGTTTCTTAATTTCAATATAGAAAGTTCTCAGGAA
TTAATACAAATACATGGCTTAAAGATGGAGGAACCAAAGGCCCTGGAGTGCAGCAAGGACATGTGTTTAT
CAGACCTTGACAATAACTACCCAAAAATCGATATTAAAAGAGAGAGAAATCAGAAGTCATTGGTTAAAGA
TCAAACGTTTGAGGTCATGTTGGCTCAGCACAATGGGTCAGACAAGAGCTCTTGTGATGCTTGCAGAGAG
AAGAAGCTACAGGTTAACACTGCACTCGGGGAAAAAAGTGTAATTGCTCTCTCATCTCTATTTACCAAAG
ACTTACTGGACAAACAAAAGTCTTGGTCTCTGGGTGGGAAAATCCAGACTGAACCGGAAAACAAAGTTAC
CCTATGCAAGGTCCATGCAAAGTCACCAAAATGCGATGGAGTGGGGCTTCCAACGGAAGAGAAGCAGCTC
TCGGAAACCTCCGTCTCGCTGTCTGACGAGAAGCAGTGGCATGACATCAACGTCTACCTGGGCCTTTCCA
GCTGCTCAAAACAGCCAGACAGGCTGGACGGGGATGGCCACGACCGCACAGGAACATCTGAGGTCTCCTG
CTGCACCCCAAATGTAGTCTGTATAGGTGACAATGACCTGTCCGAGTCCAAGTGCTGCCACCCAAGTAAC
ATCATCATCGAAGCCCCAGGACATATGACTGATACAGAGTGGATGAATATTTTCAAGCCTTCCAGAGCAC
AAAGGATTGTTCGCCACAAAACCATGTGCACTTGTTCAAGAAGTGTCAGCGCAATGAAATATAATTCCTC
AGCAAGTGAGCTCATTGGCATGCAGCCTTCCCAGTGTGTGGGTTCCTTAAAGTCTGCTGAAAGAGAAGAG
GAGTCAGCGGCCCTTCCTGACAGAAGAACCTCAGCCAATGAAAAGGATGACTTCTCTCCTACGAGTAAGC
TCCAGCGGCTGCTGGCCGAGTCCCGGCAGATGGTCACGGATCTGGAGCTGAGCACGCTGCTACCCATCAG
CTGCGAGAATCTCAACAGAAGCAAATTAGAAGTCTCAGAAGAGCCAGATGAAAAAACCACCCTTGTCAGT
CATTGA

Translation (701 aa):
MRSSEGAPSWAVALPPPLRPCAYGVSEVTRCWHQLSLGAGESSMNPSATLYRRQNIGSEVETSTIEKQRK
ELQLLIGELKDRDKELNDMVAVHQRQLLSWEEDRQKVLTLEERCSKLEGELHKRTDIIKSLMKKVKTLES
NQAECQTALQKTQQQLQEMAQKATHSTLLSEDLEARNENLSSTLVDLSAQVGQLQAREQALTTMIKLKDK
DIIEAVNHISDCSGKFKLLEHALRDAKMAETCVVREKQDYKQKLKALRIEVNKLKEDLNEKTTENNEQRE
EIIRLKQEKSCLHDELIFTVEREKRKDELLDIAKSKQDRTNSELQNLRQIYVKQQSDLQFLNFNIESSQE
LIQIHGLKMEEPKALECSKDMCLSDLDNNYPKIDIKRERNQKSLVKDQTFEVMLAQHNGSDKSSCDACRE
KKLQVNTALGEKSVIALSSLFTKDLLDKQKSWSLGGKIQTEPENKVTLCKVHAKSPKCDGVGLPTEEKQL
SETSVSLSDEKQWHDINVYLGLSSCSKQPDRLDGDGHDRTGTSEVSCCTPNVVCIGDNDLSESKCCHPSN
IIIEAPGHMTDTEWMNIFKPSRAQRIVRHKTMCTCSRSVSAMKYNSSASELIGMQPSQCVGSLKSAEREE
ESAALPDRRTSANEKDDFSPTSKLQRLLAESRQMVTDLELSTLLPISCENLNRSKLEVSEEPDEKTTLVS
H


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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