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Report for CCDS50003.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50003.1 Public Mus musculus 17 Vmn2r112 23 108 98 CCDS HistoryNCBI Gene:628185Re-query CCDS DB by CCDS ID:50003.1Re-query CCDS DB by GeneID:628185See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 50003.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000097381.4 ENSMUSP00000094994.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097381.4Link to Ensembl Protein Viewer:ENSMUSP00000094994.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000097381Re-query CCDS DB by Protein ID:ENSMUSP00000094994
Original member Current member NCBI NM_001104575.1 NP_001098045.1 Accepted alive Link to Nucleotide Sequence:NM_001104575.1Link to Protein Sequence:NP_001098045.1Re-query CCDS DB by Nucleotide ID:NM_001104575Re-query CCDS DB by Protein ID:NP_001098045Link to BLAST:NP_001098045.1

Chromosomal Locations for CCDS 50003.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 22601148 22601344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 22602245 22602536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 22602832 22603644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 22605068 22605295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 22614883 22615006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 22618214 22619133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2574 nt):
ATGTTCACCTTGATTTTCCTCTTCTTGCTACTGAACATTCCACTTCATGTGGCTGATTTTATTCATCCCA
GATGCTTTTGGAAAATGAAGCGGAATGAAAACAAGGATAGAAACCAGGGAACAGAATGTACCTTCGTGAT
TCAAGCAGTACAACAACCTGTGGAGAAAGAGTATTTTAGTCATATATTGAATATACAAACTCAGACTGAA
AATCGCAAATATGCTCTGGCTTTGGCTTTTTCCATAAATGAAATCAACAGGAACCCTGATCTTTTACCAA
ATATGTCTCTAATATTTAAATTCTCAGCAGAAAATTGTGTCTGGGAAAATAAATTAATGAGTCTTATGCA
TTCGAGTTTACAAAATTATGATATTCTCCCTAATTATTTGTGTGAAGAATACACCGAATGTGTAATGGCC
CTTACAAGCCTAAATTGGGCAACAACTGTGACACTTTATACAATCCTGAATAACTTCATGTCTGAGCAGT
TCCTTCAGATTACTTATGGACCCTTTCATCCTGTCCTGAGTGATCATGAAAAATTTCCCTATCTACATCA
GATGGCCTCTGATCATACATCTCTAGCCCTTGCCCTGGTATCCTTCATAATTCATTTTGGTTGGAACTGG
GTAGGGTTGGTCATCTCAGACAGTGATCAAGGTATCCAATTTCTCTCCTATTTGAGAAGAGAGATGGAAA
AATATACAGTGTGCTTTGCCTTTGTCAACATGATTCCAGTCAACATGAATTTATATATGTCAAGAGCTGA
AGTGTATTACAACCAAATCATGACATCATCCACAAATGTTGTCATCATTTATGGTGACACCGACAGTACA
TTAGCTGTGAGCTTTAGAATGTGGGAATCCCTAGGTATACAGAGACTATGGATCACCACCTCACAGTGGG
ATGTCAGTCCTAGTATGAAAGACTTTACATTTGGTAACAAATATGGGACTTTTGATTTTCAACAACACAA
TAGTGAGATTTCTGGTTTTAAAAATTTTGTGCAGACATTGAACTCAGTCAAATGCCCAGATGAATATCTG
GTAGAGCTGGAATGGATGCACTTTAACTGTGAGGTCTCAGCATCTAAATGTAAGCCACTGAAGAACTGCT
CATCCAGTTACTCATTTGATTGGTTAATGGAACATACTTTTGACATGGCGTTTATTGAAAAGAGTTATTA
CATATACAATGCTGTGTATGCTTTTGCCCATGCACTCCATCAGTTTACTTTTCAAAAGTTTGATAATCTG
CCCAAGGACAATGGGAAAAAACACAATTATAGCTGCAAGAAGGTGGATTCCTCTCTGAGAAAGACACAGT
TCACTAATCCTGTTGGGGACATAGTGAATATGAACCAAAAAGGCGAACTGCAGGAAGAGTATGACATTTT
CTACATTTGGAATTTCCCACAGGGCCTTGGACTTAGAATTAAAATAGGGATGTTTAGTCCCTATTTTCCA
AATGGTCAACAGGTACATTTATCTGAAGTTATGATAAGGTGGGCAAAAGGAAGTACACAGGTGCCAACTT
CTGTGTGCAGTGCTGATTGTGGTCCTGGATCTAGAAAATTCGAGATGGATGGAATGGCAGCATGCTGCTT
TCATTGCAAACCATGCCCAGAAAATGAAATTTCTAATGAGACAAATGTAGATAATTGTGTCCAGTGTCCA
GAGGACCAATATGCTAACACAGAACAGAATCACTGCATTCATAAAGCTGTTGTATTTCTCAGCTATGAAG
AACCACTGGGGATGGCACTTTCCTTACTCTCCTTGTTCTTCTCTGCATTCACAACTGTGATTCTCGGGGT
CATTGTGAAGCACCACAATACTCCAATTGTTAAGGCCAATAACAGGACTCTCACCTACATCTTGCTAATC
TCACTCATTTTTTGTTTCCTCTGCCCTTTGCTTTTCATTGGCCATCCAAACTCAGTTACATGCTTTCTAC
AACAAATCACATTTGGAGTTGTATTCACTGTTGCTCTGTCCACTGTCTTGGCTAAAACAATTACTGTAGT
TCTGGCATTCAAAATCACAGCCTCTCAAAGAATGATGAAGTATTTTCTAGTTTCAGGGGCATCTAACTAC
ATCATTCTCATTTGTACTCTCATCCAAGTTATTGTATGTGCAGTTTGGCTGGGAGCTTCTCCTCCTTTTG
TTGATATTGATGCACAATCTGAACATGGCCACATCATCATTGTTTGCCACAAGGGTTCAGTCAATGCATT
TTACTCTATTCTGGGATACTTGGCTCTCCTGTCCTTTGGGAGCTTCACTCTGGCTTTCCTTTCCAGAAAC
CTTCCTGGTGCCTTTAATGAAGCCAAATCCATAACATTCAGCATGCTGGTGTTCTGCAGTGTCTGGGTCA
CTTTCATCCCTGTTTACCACAGCACCAAAGGCAAGGTCATGGTGGCTGTGGAGATCTTCTCCACTTTGGC
TTCCAGTGCAGGGATCTTGGGATGCATCTTTGTTTCTAAATGTTACACAATATTGTTTAGACCAGACCGA
AATTCTGTTGAAATGACCAGGGTGAAATCATCTTTCCATGCTCATATTTCATAA

Translation (857 aa):
MFTLIFLFLLLNIPLHVADFIHPRCFWKMKRNENKDRNQGTECTFVIQAVQQPVEKEYFSHILNIQTQTE
NRKYALALAFSINEINRNPDLLPNMSLIFKFSAENCVWENKLMSLMHSSLQNYDILPNYLCEEYTECVMA
LTSLNWATTVTLYTILNNFMSEQFLQITYGPFHPVLSDHEKFPYLHQMASDHTSLALALVSFIIHFGWNW
VGLVISDSDQGIQFLSYLRREMEKYTVCFAFVNMIPVNMNLYMSRAEVYYNQIMTSSTNVVIIYGDTDST
LAVSFRMWESLGIQRLWITTSQWDVSPSMKDFTFGNKYGTFDFQQHNSEISGFKNFVQTLNSVKCPDEYL
VELEWMHFNCEVSASKCKPLKNCSSSYSFDWLMEHTFDMAFIEKSYYIYNAVYAFAHALHQFTFQKFDNL
PKDNGKKHNYSCKKVDSSLRKTQFTNPVGDIVNMNQKGELQEEYDIFYIWNFPQGLGLRIKIGMFSPYFP
NGQQVHLSEVMIRWAKGSTQVPTSVCSADCGPGSRKFEMDGMAACCFHCKPCPENEISNETNVDNCVQCP
EDQYANTEQNHCIHKAVVFLSYEEPLGMALSLLSLFFSAFTTVILGVIVKHHNTPIVKANNRTLTYILLI
SLIFCFLCPLLFIGHPNSVTCFLQQITFGVVFTVALSTVLAKTITVVLAFKITASQRMMKYFLVSGASNY
IILICTLIQVIVCAVWLGASPPFVDIDAQSEHGHIIIVCHKGSVNAFYSILGYLALLSFGSFTLAFLSRN
LPGAFNEAKSITFSMLVFCSVWVTFIPVYHSTKGKVMVAVEIFSTLASSAGILGCIFVSKCYTILFRPDR
NSVEMTRVKSSFHAHIS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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