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Report for CCDS52040.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52040.1 Public Mus musculus 7 Zc3h4 23 108 98 CCDS HistoryNCBI Gene:330474Re-query CCDS DB by CCDS ID:52040.1Re-query CCDS DB by GeneID:330474See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 52040.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098789.4 ENSMUSP00000096386.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098789.4Link to Ensembl Protein Viewer:ENSMUSP00000096386.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000098789Re-query CCDS DB by Protein ID:ENSMUSP00000096386
Original member Current member NCBI NM_198631.2 NP_941033.2 Accepted alive Link to Nucleotide Sequence:NM_198631.2Link to Protein Sequence:NP_941033.2Re-query CCDS DB by Nucleotide ID:NM_198631Re-query CCDS DB by Protein ID:NP_941033Link to BLAST:NP_941033.2

Chromosomal Locations for CCDS 52040.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 16401293 16401306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16416773 16416992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16417291 16417401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16420158 16420380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16421356 16421507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16422189 16422285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16422378 16422517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16423848 16423958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16425255 16425366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16425711 16425820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16428991 16429349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16429531 16429910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16432774 16433022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16434021 16435510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3768 nt):
ATGCTGAGGGGAAGGGAAGATGGTGAGTTGGAAGAAGGTGAACTGGAAGACGACGGGGCTGAGGAGGTCC
AGGACCCCCCTGGAGGACAAGAGAGGAGTCGGAAGGAGAAGGGGGAGAAGCACCACAGCGACTCTGAGGA
GGAGAAGTCTCACCGGAGGCTGAAGCGGAAGCGGAAGAAGGAGCGGGAGAAGGAAAAGAGGCGCTCGAAG
AAAAGGCGGAAATCTAAGCACAAACGCCATGCTTCCTCCAGCGATGACTTCTCGGACTTCTCAGATGACT
CAGATTTCAGCCCCAGTGAGAAGAGTCACCGCAAGTACCGGGACTATAGTCCCCCATACGCACCATCCCA
CCAGCAGTACTCCTCGTCACACAACGCACCCCTGCCCAAGAAGTCCTACTCCAAGATGGATAGCAAGGGC
TACAGCATGTATGAGGACTACGAGAATGAGCAGTATGGGGAGTACGAGGGGGATGAAGAGGAGGACATGG
GTAAGGAAGACTATGACGACTTCACCAAAGAACTGAACCAGTACCGGCGTGCCAAGGAGGGCAGCAGCCG
GGGCAGAGGTAGCCGAGGCCGAGGCAGGGGCTACAGGGGCCGTGGGAGTCGAGGAGGATCTCGAGGCCGA
GGCATGGGCAGGGGCAGCAGAGGCCGAGGCCGAGGCTCCATGGGAGAGCACCCAGAGGACGAAGAGGACT
TGTATGAAGAGGAGATAGAGTATGGAGAAAGTGAGGAGCCCATGGGAGACGATGATTACGATGACTATTC
CAAGGAGCTGAACCAGTACCGCAGGTCCAAGGACAGCCGAGGTCGAGGGTTGAGTCGAGGCCGAGGCCGC
GGTTCCCGAGGAGGCCGAGGGAAGGGGATGGGCCGGGGCAGAGGTCGAGGCGGCAGAGGTGGAATGAGCA
AGGGCGGAATGAATGATGACGAGGACTTCTACGATGATGACATGGGTGACGGTGGTGGCGGAAGCTACCG
GCGGAGTGATCATGACAAGCCCCACCAGCAGTCTGACAAGAAAGGCAAAGTCATCTGCAAATACTTTGTG
GAGGGACGATGCACTTGGGGAGACCACTGCAATTTTAGCCACGACATTGAGCTACCGAAGAAGCGAGAGT
TGTGCAAATTTTACATCACGGGGTTCTGTGCTCGTGCTGAGAACTGCCCCTACATGCATGGTGACTTTCC
GTGTAAATTATACCACACCACTGGGAACTGCATCAATGGTGACGACTGCATGTTCTCCCATGACCCGCTG
ACAGAAGAGACACGAGAGCTCCTAGATAAGATGTTGGCTGATGATGCAGAAGCAGGCGCTGAGGACGAGA
AGGAGGTAGAGGAGCTGAAGAAGCAGGGCATCAACCCTTTGCCCAAGCCACCTCCTGGTGTAGGGCTCCT
GCCTACTCCTCCACGGCCCCCTGGGCCTCCAGCCCCCACCTCTCCTAATGGCAGGCCCATGCAAGGTGGC
CCTCCTCCACCACCACCACCTCCTCCACCACCTCCTGGACCTCCTCAGATGTCCCTGCCAACACATGAGC
CACTGTCTCCACAACAGTTACAGCAGGACATGTACAACAAGAAGATCCCCTCTTTGTTTGAGATTGTGGT
GCGGCCCACGGGGCAGCTAGCTGAGAAGCTGGGCGTGAGGTTCCCTGGACCTGGTGGACCCTCGGGGCCA
ATGGGTCCTGGCCCCAACATGGGACCCCCAGGGCCAATGGGGGGACCCATGCATCCTGACATGCACCCTG
ACATGCACCCAGACATGCACCCCGACATGCACCCTGACATGCACCCCGACATGCACCCCGACATGCACCC
TGACATGCATCCTGACATGCCAATGGGTCCTGGCATGAACCCTGGCCCTCCCATGGGTCCTGGTGGCCCC
CCAATGATGCCCTATGGTCCTGGAGACTCCCCACATTCTGGAATGATGCCTCCTATCCCGCCAGCCCAGA
ACTTCTATGAGAACTTCTACCCGCAGCAAGAGGGCATGGAAATGGAGCCTGGTCTTGTTGGAGATGCAGA
GGACTACGGGCACTACGAAGAGCTGCCGGGGCAGCCTGGGGAGCCCCTCTTCCCTGAGCACCCTCTGGAG
CCTGACAGCTTCCCCGAGGGAGGGCCCCCAGGCCGGCCGAAGGCAGGCGCCGGTGTACCCGACTTCTTGC
CCTCGGCTCAGAGGGCCCTGTACCTGAGGATCCAGCAGAAGCAGCAGGAGGAGGAGAGAGCGAGGAGGCT
GGCTGAGAGCAGCAAGCAGGACCGGGAGAATGAGGAAGGTGACACTGGAAACTGGTACTCAAGTGATGAG
GATGAAGGGGGAAGCAGTGTCACATCCATCCTGAAGACCTTGAGGCAACAGACGTCAAGCCGACCCCAGG
CTTCAGTTGGGGAACCGAGCAGCAGTGGGCTGGGGGATCCCCGTCTCCAGAAGGGACACCCCACAGGAAG
TCGGCTGTCTGACCCCCGCCTCAGCCGGGACCCCAGACTCAGCCGCCATGCAGAGACTTCAGGAGGGTCT
GGCCCAGGGGACTCGGGGCCCTCTGACCCTCGGTTGGCTCGTGCTCTGCCCACCTCCAAGGCTGAAGGCA
GCCTTCATTCCAGCCCTGCAGGCCCCAGCAGTTCAAAAGGACAGCCCCCTGCAGAAGAGGAGGAAGGGGA
GAGAGCCTTGCGTGAAAAGGCGGTGAACATTCCCCTGGACCCTCTGCCTGGACACCCACTACGGGACCCT
CGCTCTCAGCTGCAACAGTTCAGCCACATCAAGAAGGATGTGACCCTGAGCAAGCCGAGCTTTGCTCGCA
CAGTGCTCTGGAACCCTGAAGACCTGATCCCCCTGCCCATCCCCAAGCAGGACGTGCCCCCAGTGCCTGC
TGCCCTGCAGTCCCTACCTGCTCTAGATCCTAGGCTACACCGTTCCACACCCCCTGGGCCTCCAAACACC
CGGCAGCGTCCAGGCTCCACAGATCCCAGCACCTCTGGCTCTAACCTACCTGACTTTGAACTCCTCTCTC
GAATCCTCAAGACCGTCAATGTCAATACCCCTGGTCAGAGTGAAAAGCCCAGTGATCCGAGGGTGCGGAA
GACCCCTACTGACCCCAGATTACAGAAGCCAGCAGATCCTGTGGCAGCCTCCCGTGCAGCCAAGCCCTGT
CCCACTGAAGCATCGCCTCCTGCTGCCAGCCCAAGCGGGGATTCATCCCCACCGGCCACGGCTCCCTATG
ACCCCCGAGTGCTGGCTGCTGGTGGCTTGGGCCAGGGCAGCAGCAGCGGGCAGAGCAGTGTGCTGAGTGG
TATCAGCTTATATGACCCAAGGACTCCCAATGCAGGTGGCAAAACTGCAGAGCCAGCTTCTGACACAAGT
GCTCAGCCCAAGGGTCCTGAGGGCAATGGCAAGGGCTCAGCCTCCAAGGCAAAAGAGCCTCCGTTTGTCC
GAAAGTCTGCCCTGGAGCAGCCAGAGACAGGGAAGGCCAGCACAGATGGGGCCACAGCCACGGACAGATA
CAATAGCTACAACCGGCCCCGGCCCAAGGCCACAGCAGCCCCCACTGCTGCCTCATCCACCCCGCCCCCT
GAGGGGGCCACACCCCAGCCTGGGGTACACAACCTGCCAGTGCCCACTCTCTTTGGGACTGTAAAGCCGG
CCCCCAAAACAGGCACAGGGAGCCCCTTTGCTGGCAACAGCCCTGCCCGTGAGGGTGAGCAGGATGCAGG
ATCCCTGAAGGACGTTTTTAAAGGCTTTGACCCCACAGCCTCCCCCTTCTGCCAGTAG

Translation (1255 aa):
MLRGREDGELEEGELEDDGAEEVQDPPGGQERSRKEKGEKHHSDSEEEKSHRRLKRKRKKEREKEKRRSK
KRRKSKHKRHASSSDDFSDFSDDSDFSPSEKSHRKYRDYSPPYAPSHQQYSSSHNAPLPKKSYSKMDSKG
YSMYEDYENEQYGEYEGDEEEDMGKEDYDDFTKELNQYRRAKEGSSRGRGSRGRGRGYRGRGSRGGSRGR
GMGRGSRGRGRGSMGEHPEDEEDLYEEEIEYGESEEPMGDDDYDDYSKELNQYRRSKDSRGRGLSRGRGR
GSRGGRGKGMGRGRGRGGRGGMSKGGMNDDEDFYDDDMGDGGGGSYRRSDHDKPHQQSDKKGKVICKYFV
EGRCTWGDHCNFSHDIELPKKRELCKFYITGFCARAENCPYMHGDFPCKLYHTTGNCINGDDCMFSHDPL
TEETRELLDKMLADDAEAGAEDEKEVEELKKQGINPLPKPPPGVGLLPTPPRPPGPPAPTSPNGRPMQGG
PPPPPPPPPPPPGPPQMSLPTHEPLSPQQLQQDMYNKKIPSLFEIVVRPTGQLAEKLGVRFPGPGGPSGP
MGPGPNMGPPGPMGGPMHPDMHPDMHPDMHPDMHPDMHPDMHPDMHPDMHPDMPMGPGMNPGPPMGPGGP
PMMPYGPGDSPHSGMMPPIPPAQNFYENFYPQQEGMEMEPGLVGDAEDYGHYEELPGQPGEPLFPEHPLE
PDSFPEGGPPGRPKAGAGVPDFLPSAQRALYLRIQQKQQEEERARRLAESSKQDRENEEGDTGNWYSSDE
DEGGSSVTSILKTLRQQTSSRPQASVGEPSSSGLGDPRLQKGHPTGSRLSDPRLSRDPRLSRHAETSGGS
GPGDSGPSDPRLARALPTSKAEGSLHSSPAGPSSSKGQPPAEEEEGERALREKAVNIPLDPLPGHPLRDP
RSQLQQFSHIKKDVTLSKPSFARTVLWNPEDLIPLPIPKQDVPPVPAALQSLPALDPRLHRSTPPGPPNT
RQRPGSTDPSTSGSNLPDFELLSRILKTVNVNTPGQSEKPSDPRVRKTPTDPRLQKPADPVAASRAAKPC
PTEASPPAASPSGDSSPPATAPYDPRVLAAGGLGQGSSSGQSSVLSGISLYDPRTPNAGGKTAEPASDTS
AQPKGPEGNGKGSASKAKEPPFVRKSALEQPETGKASTDGATATDRYNSYNRPRPKATAAPTAASSTPPP
EGATPQPGVHNLPVPTLFGTVKPAPKTGTGSPFAGNSPAREGEQDAGSLKDVFKGFDPTASPFCQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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