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Report for CCDS37130.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37130.1 Public Mus musculus 15 Eif3d 23 108 98 CCDS HistoryNCBI Gene:55944Re-query CCDS DB by CCDS ID:37130.1Re-query CCDS DB by GeneID:55944See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37130.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100484.5 ENSMUSP00000098053.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100484.5Link to Ensembl Protein Viewer:ENSMUSP00000098053.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000100484Re-query CCDS DB by Protein ID:ENSMUSP00000098053
Original member NCBI NM_018749.2 NP_061219.2 Updated not alive Link to Nucleotide Sequence:NM_018749.2Link to Protein Sequence:NP_061219.2Re-query CCDS DB by Nucleotide ID:NM_018749Re-query CCDS DB by Protein ID:NP_061219
Current member NCBI NM_018749.3 NP_061219.2 Accepted alive Link to Nucleotide Sequence:NM_018749.3Link to Protein Sequence:NP_061219.2Re-query CCDS DB by Nucleotide ID:NM_018749Re-query CCDS DB by Protein ID:NP_061219Link to BLAST:NP_061219.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061219.2 548 O70194 548 100% 0 0

Chromosomal Locations for CCDS 37130.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 77959109 77959122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77959512 77959795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77959954 77960096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77961614 77961743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77961846 77961931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77962440 77962570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77963178 77963325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77964020 77964152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77964903 77965015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77966138 77966210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77966682 77966767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77967303 77967439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77968176 77968221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77968457 77968579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1647 nt):
ATGGCGAAGTTCATGACACCTGTGATCCAGGACAACCCCTCAGGCTGGGGTCCCTGTGCCGTTCCTGAGC
AATTTCGGGATATGCCCTACCAGCCATTCAGCAAAGGAGATCGGCTGGGAAAGGTTGCAGACTGGACAGG
GGCCACATACCAGGACAAGAGGTACACAAACAAGTATTCCTCTCAGTTCGGTGGGGGAAGTCAGTATGCA
TATTTCCATGAGGAGGATGAGACAAGCTTCCAGCTGGTGGACACGGCACGGACACAGAAGACCGCCTACC
AGCGGAACCGGATGAGATTCGCACAGCGCAACCTCCGCAGAGACAAAGATCGGAGGAACATGGTGCAGTT
CAACCTACAGACCCTGCCCAAGAGTGCCAAGCAGAAAGAGAGAGAACGAATTCGCTTGCAGAAAAAATTC
CAGAAGCAATTTGGAGTGAGGCAAAAATGGGACCAGAAGTCACAGAAACCCCGAGACTCCTCAGTTGAAG
TTCGCAGTGACTGGGAGGTGAAGGAGGAGATGGACTTCCCTCAGCTGATGAAGATGCGCTACTTGGAAGT
GTCAGAGCCTCAAGACATCGAGTGCTGCGGAGCCCTGGAGTACTACGACAAAGCCTTTGACCGCATCACC
ACAAGGAGTGAGAAGCCCCTGCGGAGCATCAAGCGCATCTTTCACACCGTCACCACCACAGACGACCCTG
TCATCCGGAAGCTGGCAAAAACGCAGGGCAATGTGTTTGCCACTGACGCCATCCTGGCCACGCTGATGAG
CTGCACCCGCTCCGTGTACTCCTGGGACATCGTTGTCCAGAGAGTCGGCTCTAAACTCTTCTTTGACAAG
AGGGACAACTCTGACTTTGACCTCCTGACTGTGAGTGAGACAGCCAATGAGCCGCCTCAAGATGAAGGCA
ACTCCTTCAACTCACCCCGGAACCTGGCCATGGAAGCCACCTACATCAACCACAACTTCTCTCAGCAGTG
CCTGAGAATGGGAAGAGAAAGATACAATTTCCCCAACCCAAACCCATTTGTGGAGGACGACATGGATAAG
AATGAGATCGCCTCCGTCGCTTACCGTTACCGCAGGTGGAAGCTTGGAGATGACATCGACCTTATCGTCC
GCTGTGAACACGATGGTGTCATGACCGGGGCCAACGGGGAAGTGTCCTTCATCAACATCAAGACGCTCAA
TGAATGGGACTCCAGGCATTGTAATGGCGTTGACTGGCGTCAGAAGCTGGACTCTCAGCGTGGGGCTGTC
ATCGCCACTGAATTGAAGAACAACAGCTACAAGTTGGCACGGTGGACCTGCTGTGCTTTGCTGGCTGGAT
CTGAGTACCTGAAGCTCGGGTATGTGTCCCGGTACCACGTAAAGGACTCCTCACGCCATGTCATCCTGGG
CACCCAGCAGTTTAAGCCCAATGAGTTTGCCAGTCAGATCAACCTGAGCGTGGAGAATGCCTGGGGCATC
CTGCGCTGCGTCATCGACATCTGCATGAAGCTGGAGGAGGGCAAGTACCTCATCCTCAAGGACCCCAACA
AGCAGGTCATCCGGGTCTACAGCCTGCCTGATGGCACCTTCAGCTCTGAGGAGGACGAAGAGGACGAGGA
GGAGGAAGAGGAGGAAGAGGAAGAGGAAGAAACTTAA

Translation (548 aa):
MAKFMTPVIQDNPSGWGPCAVPEQFRDMPYQPFSKGDRLGKVADWTGATYQDKRYTNKYSSQFGGGSQYA
YFHEEDETSFQLVDTARTQKTAYQRNRMRFAQRNLRRDKDRRNMVQFNLQTLPKSAKQKERERIRLQKKF
QKQFGVRQKWDQKSQKPRDSSVEVRSDWEVKEEMDFPQLMKMRYLEVSEPQDIECCGALEYYDKAFDRIT
TRSEKPLRSIKRIFHTVTTTDDPVIRKLAKTQGNVFATDAILATLMSCTRSVYSWDIVVQRVGSKLFFDK
RDNSDFDLLTVSETANEPPQDEGNSFNSPRNLAMEATYINHNFSQQCLRMGRERYNFPNPNPFVEDDMDK
NEIASVAYRYRRWKLGDDIDLIVRCEHDGVMTGANGEVSFINIKTLNEWDSRHCNGVDWRQKLDSQRGAV
IATELKNNSYKLARWTCCALLAGSEYLKLGYVSRYHVKDSSRHVILGTQQFKPNEFASQINLSVENAWGI
LRCVIDICMKLEEGKYLILKDPNKQVIRVYSLPDGTFSSEEDEEDEEEEEEEEEEEET


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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