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Report for CCDS71137.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71137.1 Public Mus musculus 2 Gabpb1 23 108 98 CCDS HistoryNCBI Gene:14391Re-query CCDS DB by CCDS ID:71137.1Re-query CCDS DB by GeneID:14391See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71137.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110425.8 ENSMUSP00000106055.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110425.8Link to Ensembl Protein Viewer:ENSMUSP00000106055.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110425Re-query CCDS DB by Protein ID:ENSMUSP00000106055
Original member NCBI NM_001271468.1 NP_001258397.1 Updated not alive Link to Nucleotide Sequence:NM_001271468.1Link to Protein Sequence:NP_001258397.1Re-query CCDS DB by Nucleotide ID:NM_001271468Re-query CCDS DB by Protein ID:NP_001258397
Current member NCBI NM_001271468.2 NP_001258397.1 Accepted alive Link to Nucleotide Sequence:NM_001271468.2Link to Protein Sequence:NP_001258397.1Re-query CCDS DB by Nucleotide ID:NM_001271468Re-query CCDS DB by Protein ID:NP_001258397Link to BLAST:NP_001258397.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258397.1 383 Q00420-1 383 100% 0 0

Chromosomal Locations for CCDS 71137.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 126630230 126630382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126639229 126639344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126646563 126646748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126650068 126650181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126650509 126650620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126652233 126652427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126653555 126653722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126658470 126658577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1152 nt):
ATGTCCCTGGTAGATTTGGGGAAGAAGCTTTTAGAAGCGGCACGAGCCGGTCAAGATGATGAAGTTCGCA
TTTTGATGGCAAATGGAGCTCCTTTTACTACAGACTGGTTGGGAACTTCTCCACTTCATCTGGCCGCACA
GTATGGGCATTTCTCTACCACAGAGGTTCTTCTCCGAGCCGGTGTAAGTAGAGATGCCAGGACCAAAGTG
GACCGGACACCACTGCACATGGCGGCTTCTGAGGGCCATGCCAACATAGTAGAAGTTTTGCTTAAGCATG
GTGCTGACGTCAATGCAAAGGATATGTTAAAGATGACAGCTCTGCATTGGGCAACAGAACATAATCATCA
AGAGGTGGTGGAGCTTTTAATCAAATATGGTGCTGATGTACACACGCAGAGTAAATTTTGTAAAACTGCA
TTTGATATTTCAATAGACAATGGAAATGAAGATTTAGCAGAGATATTACAGATTGCTATGCAGAACCAAA
TCAACACCAACCCGGAGAGTCCTGACACTGTGACAATACACGCTGCCACACCACAGTTCATCATTGGACC
CGGAGGGGTGGTGAACCTCACAGATGAAACAGGAGTATCTGCTGTTCAGTTTGGAAACTCCTCTACGTCA
GTATTAGCTACGTTAGCTGCCTTAGCTGAAGCTTCTGCCCCATTGTCCAATTCTTCAGAAACTCCAGTAG
TGGCCACAGAGGAAGTGGTTACCGCAGAATCTGTGGATGGTGCAATTCAGCAAGTAGTTAGCTCAGGGGG
TCAGCAAGTCATCACGATAGTTACAGATGGAATCCAGCTGGGGAATTTGCACTCCATACCAACCAGTGGG
ATGGGTCAGCCCATCATTGTGACGATGCCCGATGGACAGCAAGTATTGACAGTACCAGCAACAGACATTG
CTGAAGAAACTGTCATCAGTGAAGAGCCACCAGCTAAGAGACAGTGTATGGAAATAATTGAGAGCCGGGT
GGAATGTGCAGAAATTGAAGAGAGAGAAGCGCTTCAGAAACAGCTGGATGAAGCCAACCGAGAGGCCCAG
AAATACCGACAGCAGCTGCTTAAGAAGGAGCAGGAGGCAGAGGCCTACAGGCAGAAGCTGGAGGCCATGA
CACGCATCCAGACCAACAAAGAAGCCGTTTAG

Translation (383 aa):
MSLVDLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKV
DRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTA
FDISIDNGNEDLAEILQIAMQNQINTNPESPDTVTIHAATPQFIIGPGGVVNLTDETGVSAVQFGNSSTS
VLATLAALAEASAPLSNSSETPVVATEEVVTAESVDGAIQQVVSSGGQQVITIVTDGIQLGNLHSIPTSG
MGQPIIVTMPDGQQVLTVPATDIAEETVISEEPPAKRQCMEIIESRVECAEIEEREALQKQLDEANREAQ
KYRQQLLKKEQEAEAYRQKLEAMTRIQTNKEAV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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