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Report for CCDS23206.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23206.1 Public Mus musculus 9 Rcn2 23 108 98 CCDS HistoryNCBI Gene:26611Re-query CCDS DB by CCDS ID:23206.1Re-query CCDS DB by GeneID:26611See the combined annotation on chromosome 9 in Sequence Viewer

Public Note for CCDS 23206.1
This CCDS representation uses a downstream start codon that is well-conserved in mammalian organisms. It also contains an upstream in-frame start codon that would result in a 35 aa N-terminal extension. However, this upstream start codon is only present in mouse and rat, and its use would eliminate an N-terminal signal peptide that is only predicted in the shorter N-terminus. N-terminal sequencing of the rat protein in PMID:7722520 indicates signal peptide cleavage. It is likely that the upstream start codon is skipped due to leaky scanning by ribosomes, thereby permitting translation initiation at the currently represented start codon.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 23206.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114276.2 ENSMUSP00000109915.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114276.2Link to Ensembl Protein Viewer:ENSMUSP00000109915.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114276Re-query CCDS DB by Protein ID:ENSMUSP00000109915
Original member Current member NCBI NM_011992.2 NP_036122.2 Accepted alive Link to Nucleotide Sequence:NM_011992.2Link to Protein Sequence:NP_036122.2Re-query CCDS DB by Nucleotide ID:NM_011992Re-query CCDS DB by Protein ID:NP_036122Link to BLAST:NP_036122.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036122.2 320 Q8BP92 320 100% 0 0

Chromosomal Locations for CCDS 23206.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 56042052 56042204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 56042575 56042680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 56045132 56045328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 56052907 56053020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 56056159 56056255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 56057427 56057569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 56058059 56058211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (963 nt):
ATGCGGCTGGGCCCAAGGCCCGCGGCGCTAGGACTGCTGCTGCCGCTGCTGCTGTACGCCGCGGTGGCTG
GCGCCAGCAAGGCGGAGGAACTGCACTACCCGCAGGGCGAGCACCGGGCGGACTACGACCGCGAAGCGCT
GCTGGGTGTCCAGGAAGACGTCGATGAGTATGTTAAACTTGGCCACGAAGAGCAGCAAAGACGATTGCAG
TCGATCATAAAGAAAATTGACTCGGACTCTGATGGCTTTCTTACTGAAAATGAACTCAGTCAGTGGATTC
AGATGTCTTTTAAGCATTACGCTATGCAAGAAGCCAAGCAGCAGTTTGTGGAGTATGATAAGAACAGCGA
CGGCGCTGTGACGTGGGATGAGTACAACATCCAGATGTACGACCGGGTGATTGACTTTGATGAGAACACT
GCTCTGGATGACACAGAAGAGGGGTCGTTCAGGCAGCTTCATCTAAAGGATAAGAAGCGATTTGAAAAAG
CTAACCAGGATTCAGGTCCTGGTCTGAGTCTTGAAGAGTTCATTGCGTTTGAGCACCCTGAAGAAGTTGA
CTATATGACGGAGTTCGTCATCCAAGAGGCTTTGGAAGAACATGACAAAAATGGCGATGGGTTTGTTAGT
TTGGAAGAATTTCTTGGCGATTACAGGCGGGATCCAACTGCAAATGAAGACCCAGAATGGATACTTGTTG
AAAAGGACAGATTTGTGAATGATTATGACAAAGATAATGATGGCCGGCTTGATCCCCAAGAGCTGTTGTC
ATGGGTAGTGCCCAATAACCAGGGCATTGCACAAGAGGAAGCTCTTCATCTGATTGATGAGATGGATTTG
AATAGTGACAAAAAGCTCTCTGAAGAAGAGATTCTGGAAAACCAAGACTTGTTCCTTACCAGCGAAGCCA
CGGATTATGGCCGACAGCTCCATGACGACTACTTCTATCATGACGAGCTTTAA

Translation (320 aa):
MRLGPRPAALGLLLPLLLYAAVAGASKAEELHYPQGEHRADYDREALLGVQEDVDEYVKLGHEEQQRRLQ
SIIKKIDSDSDGFLTENELSQWIQMSFKHYAMQEAKQQFVEYDKNSDGAVTWDEYNIQMYDRVIDFDENT
ALDDTEEGSFRQLHLKDKKRFEKANQDSGPGLSLEEFIAFEHPEEVDYMTEFVIQEALEEHDKNGDGFVS
LEEFLGDYRRDPTANEDPEWILVEKDRFVNDYDKDNDGRLDPQELLSWVVPNNQGIAQEEALHLIDEMDL
NSDKKLSEEEILENQDLFLTSEATDYGRQLHDDYFYHDEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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