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Report for CCDS28197.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28197.2 Public Mus musculus 16 Cd200l1 23 108 98 CCDS HistoryNCBI Gene:208166Re-query CCDS DB by CCDS ID:28197.2Re-query CCDS DB by GeneID:208166See the combined annotation on chromosome 16 in Sequence Viewer

Public Note for CCDS 28197.2
The coding region has been updated to correct mismatches and indels versus the reference genome sequence. The update results in an upstream in-frame AUG start codon which adds 87aa to the N-terminus and a PFAM immunoglobulin V-set domain.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 28197.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114585.2 ENSMUSP00000110233.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114585.2Link to Ensembl Protein Viewer:ENSMUSP00000110233.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114585Re-query CCDS DB by Protein ID:ENSMUSP00000110233
Original member Current member NCBI NM_001005854.2 NP_001005854.2 Accepted alive Link to Nucleotide Sequence:NM_001005854.2Link to Protein Sequence:NP_001005854.2Re-query CCDS DB by Nucleotide ID:NM_001005854Re-query CCDS DB by Protein ID:NP_001005854Link to BLAST:NP_001005854.2

Chromosomal Locations for CCDS 28197.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 45417886 45418009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45419832 45419943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45442447 45442746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45443827 45444165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45492854 45492881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (903 nt):
ATGCTTCTTCTCTGTGCGCAAGAATCAGAGTCTTCACAGAGGATAAAGCATAACACTTATGAGAGGGCTG
TCCTGGGAGGAAACATTTCCATCTTCTGCAACTTTACAAGTCTGGAAAATGTTGAACAAATCACCTGGCA
AAAAATCCAAGGCTCATTACCTCAAAATATTGGCACTTACAGTCATAAATATGGAGAAAAAATTCTACCA
CCATATGTAAACAGGTTGCAGTGCAAGATCTTGGAACCCAGTACCTACTTCATGACTATCCAAGGAGTGA
CATTTGAAGATGAAGCCTGCTACAAGTGTCTGTTTAACACTTTTCCACATGGCAGCCATGGAGGACAAAC
CTGCCTCACCATTATAACTGTATCTGAACTAGTAACTGAGCTCCGGTCTGCTCCTGGCTCTGAAGATCTT
CATAGCCTTCTTTGTTCAGCTGTGGGAAAGCCTGCCCCTGGAATCTCCGTTTACCCTTCACAAGTCACAG
TGCAGGCACCACAAGAGTACTTTGCTCAGAACGCCAATGCCACGGTGACTGTCACTAAAATCTACAACAT
CTCTTTGAAAACTGCGAGGTCCCTGGGTCTCCAGGACTTGGTTGTGTCAATGACTCACTCTGTAAGAAAC
GAAGAGAAAATAGTCCGATTGCCAGTCAATCAAGGAGGTACCACGAATCCTTGTTTAAACTGGATGATAA
CTGCGATTGCATTCATCATTTTGTTTTTGGTTTCATGCATCATCAGTGCTGTTCTCTACATTTATTTCCA
AAAGAAAAGGTCAAATAACATGCCCGAGCCATCATCAACACAGATGCCTAACCCACTATCAACACTGGTA
CCCACACCACCATCAACAGAGACTGAGAACTTAATGAGACATCACTGCCAGTCTGAGACATAA

Translation (300 aa):
MLLLCAQESESSQRIKHNTYERAVLGGNISIFCNFTSLENVEQITWQKIQGSLPQNIGTYSHKYGEKILP
PYVNRLQCKILEPSTYFMTIQGVTFEDEACYKCLFNTFPHGSHGGQTCLTIITVSELVTELRSAPGSEDL
HSLLCSAVGKPAPGISVYPSQVTVQAPQEYFAQNANATVTVTKIYNISLKTARSLGLQDLVVSMTHSVRN
EEKIVRLPVNQGGTTNPCLNWMITAIAFIILFLVSCIISAVLYIYFQKKRSNNMPEPSSTQMPNPLSTLV
PTPPSTETENLMRHHCQSET


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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