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Report for CCDS37779.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37779.1 Public Mus musculus 18 Pcdha11 23 108 98 CCDS HistoryNCBI Gene:12942Re-query CCDS DB by CCDS ID:37779.1Re-query CCDS DB by GeneID:12942See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 37779.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115657.9 ENSMUSP00000111321.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115657.9Link to Ensembl Protein Viewer:ENSMUSP00000111321.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000115657Re-query CCDS DB by Protein ID:ENSMUSP00000111321
Original member Current member NCBI NM_009960.1 NP_034090.1 Accepted alive Link to Nucleotide Sequence:NM_009960.1Link to Protein Sequence:NP_034090.1Re-query CCDS DB by Nucleotide ID:NM_009960Re-query CCDS DB by Protein ID:NP_034090Link to BLAST:NP_034090.1

Chromosomal Locations for CCDS 37779.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 37010858 37013251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37156155 37156213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37159265 37159353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37184946 37185256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2853 nt):
ATGTTAAGTTTTCAGAGAAGGGGATCCTGCACTCTGCCACCGCTGCGCTGGCTTCTTCTCCTCGCTGCCT
GGGAGGCAGGGAGCGGCCAGCTCCACTACTCTATCCCAGAGGAGGCCAAACACGGCACCTTCGTGGGCCG
CATCGCGCAGGACCTGGGGCTGGAGCTGACGGAGCTGGTGCCCCGCCTGTTCAGGGTGGCGTCCAAGGAC
CGCGGGGACCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGGGAGG
AGCTGTGCGGGCGGAGCGCGGAGTGCAGCATCCACCTGGAGGTGATCGTGGACAGGCCGCTGCAGGTTTT
CCACGTGGAGGTGGAGGTGAGGGACATTAATGACAACCCGCCAGTGTTTCCTCTTAGAGAACAAAGGCTG
CTTATTTCTGAATCCAAGCAACCAGACTCGCGTTTTCCGCTAGAGGGAGCGTCTGATGCGGACATAGGAG
AGAACGCTGTATTGGTCTACAGATTAAGTCAAAACGAGTATTTTTCTTTAGAACCACCAATCAATAGTAA
GCAAACTAAAAGACCGTCACTTATATTAAAGAAGGTTCTAGATCGGGAGAAAACCCCGGAACTTAATTTG
CTATTAACAGCCACAGATGGGGGAAAACCGGAGCTCACGGGTACAGTTCAGCTTTGGGTTCGTGTCTTAG
ATGTTAACGACAATGATCCAGTGTTCGATCATTTAGAATACAAGGTAAGAATAATGGAAAATGCTGCTAA
AGAAACTCTTGTCATAACGTTGAACGCCACGGATCTAGACGAAGGTGCAAACGGGCAACTGGTATACTCT
TTGATGTCCATTAAGCCCACTGGGAGGCATTTATTTACCCTAGATGAAAAAAATGGAGAATTGAGGGTCA
ACGGGACTTTAGATTATGAAGAGAACAAATTGTATGAAATAGAAGTGCTGGCCACGGATAAAGGAACACC
TCCAATGGTAGGTCACTGTGTAGTCTTGGTAGAAATCTTAGACACCAATGACAACTCCCCTGAAGTGACA
TTAACTTCGCTGTCCCTCCCAGTAAGAGAGGATGCCCAGCCAAATACAGTCATTGCTTTAATTAGCGTAT
CCGACCTTGATTCTGGAATCAATGGCCAAGTGACCTGCTCTCTTACACCCAATGTCCCCTTCAAGATTGT
ATCCACCTTTAAAAATTATTATTCTCTGGTACTGGATAGCAGTCTGGACCGCGAGAGAGTGTCAACTTAT
GATTTGGTTGTGATAGCGCGGGACGGGGGCTCGCCTTCACTGTCTGCCACTGTCAGCGTGTCCGTGGAAG
TGGCTGACGTGAACGACAATGCTCCAGTGTTCGCGCAGCCTGAATACACGGTGTTCGTGAAGGAGAACAA
CCCGCCTGGAGCGCACATCTTTACAGTGTCAGCGATGGATGCGGATGCGCAGGAGAACGCGCTGGTGTCC
TACTCGCTGGTGGAGCGGAGGGTGGGCGAGCGCTTGCTGTCGAGCTATGTGTCTGTGCACGCGGAGAGCG
GCAAGGTGTTCGCGCTGCAGCCTCTGGACCATGAGGAGCTGGAGCTGCTGCAGTTCCAGGTGAGCGCGCG
GGATGCTGGTGTGCCTGCCCTGGGCAGCAATGTGACTCTGCAGGTGTTTGTGCTGGATGAGAATGACAAT
GCGCCCACGCTGCTGCCTCATGGAGCTGTTGGAGCTGGTGGGGCAGTGAGCGAGCTTGTGTCTCGGTCGG
TGGGATCGGGCCATGTAGTCACCAAGGTGCGGGCAGTGGATGCCGACTCTGGTTACAATGCTTGGCTGTC
ATATGAAGTACAGTTGGGAACAGGTGGCGTACGCAGCCCCTTCCGCGTGGGTCTGTACACGGGTGAGATC
AGCACGACGCGTGCCTTGGATGAGGTGGACTCTCCTCGGCAGACTCTATTGGTGCTGGTGAAGGACCATG
GTGAGCCAGCACTGACAGCCACTGCAACTGTTTTAGTGTCTCTTGTGGAAAGCGGCCAAGCTCCAAAGTC
CTTTTCACAGGCATCAGGTCGTGCTTCAGCCCCGGAGGCATCGCTGGTGGATGTCAACGTGTATTTGATT
ATCGCCATCTGCGCAGTGTCCAGCCTGTTGGTACTCACGCTGCTGCTGTATACAGCGCTGCGCTGCTCAG
CATTGCCTATGGTCAATGAGGCCACTGGGGGGCCTGGAAAGCCCATGCTGGTGTGCTCCAGCGAGGTGGG
GAGCTGGTCCTACTCACAGCAGAGGCGGCAGAGGGTGTGCTCTGGGGAAGTTCTTCCCAAGACCGACCTC
ATGGCATTTAGCCCCAGCCTACCTCCCAACCTGGGTAGAGATGAAAGGGAAAGACAGGAGTCAGAGTCAA
GTCACCCTGGACAGCCCCGGCAGCCCAACCCTGACTGGCGCTACTCTGCCTCGCTAAGAGCAGGCATGCA
CAGCTCTGTGCACCTGGAGGAGGCTGGCATTCTACGGGCTGGTCCAGGAGGGCCTGATCAGCAGTGGCCA
ACAGTATCCAGTGCAACACCAGAACCTGAGGCAGGAGAGGTGTCCCCTCCGGTGGGCGCCGGTGTCAACA
GCAACAGCTGGACCTTTAAATACGGACCAGGCAACCCCAAACAGTCCGGTCCCGGTGAGTTGCCAGACAA
ATTCATTATCCCAGGATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTGCTAACAACCAAATTGACAAA
AGCGATTTTATAACCTTCGGCAAAAAGGAGGAGACCAAGAAAAAGAAGAAAAAGAAGAAGGGTAACAAGA
CCCAGGAGAAAAAAGAGAAAGGGAACAGCACGACGGACAACAGTGACCAGTGA

Translation (950 aa):
MLSFQRRGSCTLPPLRWLLLLAAWEAGSGQLHYSIPEEAKHGTFVGRIAQDLGLELTELVPRLFRVASKD
RGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVEVEVRDINDNPPVFPLREQRL
LISESKQPDSRFPLEGASDADIGENAVLVYRLSQNEYFSLEPPINSKQTKRPSLILKKVLDREKTPELNL
LLTATDGGKPELTGTVQLWVRVLDVNDNDPVFDHLEYKVRIMENAAKETLVITLNATDLDEGANGQLVYS
LMSIKPTGRHLFTLDEKNGELRVNGTLDYEENKLYEIEVLATDKGTPPMVGHCVVLVEILDTNDNSPEVT
LTSLSLPVREDAQPNTVIALISVSDLDSGINGQVTCSLTPNVPFKIVSTFKNYYSLVLDSSLDRERVSTY
DLVVIARDGGSPSLSATVSVSVEVADVNDNAPVFAQPEYTVFVKENNPPGAHIFTVSAMDADAQENALVS
YSLVERRVGERLLSSYVSVHAESGKVFALQPLDHEELELLQFQVSARDAGVPALGSNVTLQVFVLDENDN
APTLLPHGAVGAGGAVSELVSRSVGSGHVVTKVRAVDADSGYNAWLSYEVQLGTGGVRSPFRVGLYTGEI
STTRALDEVDSPRQTLLVLVKDHGEPALTATATVLVSLVESGQAPKSFSQASGRASAPEASLVDVNVYLI
IAICAVSSLLVLTLLLYTALRCSALPMVNEATGGPGKPMLVCSSEVGSWSYSQQRRQRVCSGEVLPKTDL
MAFSPSLPPNLGRDERERQESESSHPGQPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPANNQIDK
SDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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