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Report for CCDS15845.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15845.1 Public Mus musculus 2 Spaca9 23 108 98 CCDS HistoryNCBI Gene:69987Re-query CCDS DB by CCDS ID:15845.1Re-query CCDS DB by GeneID:69987See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 15845.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102877.7 ENSMUSP00000099941.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102877.7Link to Ensembl Protein Viewer:ENSMUSP00000099941.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102877Re-query CCDS DB by Protein ID:ENSMUSP00000099941
Original member Current member EBI ENSMUST00000124840.1 ENSMUSP00000121846.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000124840.1Link to Ensembl Protein Viewer:ENSMUSP00000121846.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000124840Re-query CCDS DB by Protein ID:ENSMUSP00000121846
Original member Current member NCBI NM_027283.1 NP_081559.1 Accepted alive Link to Nucleotide Sequence:NM_027283.1Link to Protein Sequence:NP_081559.1Re-query CCDS DB by Nucleotide ID:NM_027283Re-query CCDS DB by Protein ID:NP_081559Link to BLAST:NP_081559.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081559.1 168 Q7TPM5-1 168 100% 0 0

Chromosomal Locations for CCDS 15845.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 28692141 28692152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28692912 28693059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28693624 28693826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28695907 28696050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (507 nt):
ATGAATGAGGTGAAAGAGTCCCTCCGCAGCATCGAGCAGAAGTATAAGCTCTTCCAGCAGCAACAGTTCA
CCTTCATTGCGGCTCTGGAGCACTGCCGGGAGAATGCCCACGACAAAATCCGGCCCATCTCCAGTATCGA
GCAGGTGCAGAGCTACATGGAACACTACTGCAATAACTCCACCCACCGGCGGATTCTGATCATGTTCATG
GACATCTGCTCCGAGCTCAGCAAGCTCTGTCAGCACTTTGAGGCCCTGCACTCTGGCACCCCTGTCACCA
ACAGCCTTCTCGAGAAATGTAAAACCCTGGTCAGCCAAAGCAATGACTTGAGCAGCCTCAGAGCCAAGTA
TCCGCACGAAGTGGTTAACCACCTCAGCTGCGATGAGGCCAGGAACCACTATGGAGGCGTGGTCAGCCTC
ATCCCTATAGTCCTGGACTTTATGAAAGAGTGGATTGCTCATTCTGAGAAGCTGCCTCGCAAAGTGCTGC
AGCATGGGACGACATAG

Translation (168 aa):
MNEVKESLRSIEQKYKLFQQQQFTFIAALEHCRENAHDKIRPISSIEQVQSYMEHYCNNSTHRRILIMFM
DICSELSKLCQHFEALHSGTPVTNSLLEKCKTLVSQSNDLSSLRAKYPHEVVNHLSCDEARNHYGGVVSL
IPIVLDFMKEWIAHSEKLPRKVLQHGTT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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