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Report for CCDS14810.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14810.1 Public Mus musculus 1 St18 23 108 98 CCDS HistoryNCBI Gene:240690Re-query CCDS DB by CCDS ID:14810.1Re-query CCDS DB by GeneID:240690See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14810.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043578.12 ENSMUSP00000042056.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043578.12Link to Ensembl Protein Viewer:ENSMUSP00000042056.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000043578Re-query CCDS DB by Protein ID:ENSMUSP00000042056
Original member Current member EBI ENSMUST00000131494.7 ENSMUSP00000117789.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000131494.7Link to Ensembl Protein Viewer:ENSMUSP00000117789.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000131494Re-query CCDS DB by Protein ID:ENSMUSP00000117789
Original member Current member EBI ENSMUST00000140079.7 ENSMUSP00000118322.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000140079.7Link to Ensembl Protein Viewer:ENSMUSP00000118322.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000140079Re-query CCDS DB by Protein ID:ENSMUSP00000118322
Original member Current member EBI ENSMUST00000150761.7 ENSMUSP00000120298.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000150761.7Link to Ensembl Protein Viewer:ENSMUSP00000120298.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000150761Re-query CCDS DB by Protein ID:ENSMUSP00000120298
Original member Current member EBI ENSMUST00000151281.7 ENSMUSP00000122055.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000151281.7Link to Ensembl Protein Viewer:ENSMUSP00000122055.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000151281Re-query CCDS DB by Protein ID:ENSMUSP00000122055
Original member Current member EBI ENSMUST00000163727.3 ENSMUSP00000131417.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163727.3Link to Ensembl Protein Viewer:ENSMUSP00000131417.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000163727Re-query CCDS DB by Protein ID:ENSMUSP00000131417
Original member Current member NCBI NM_001244692.1 NP_001231621.1 Accepted alive Link to Nucleotide Sequence:NM_001244692.1Link to Protein Sequence:NP_001231621.1Re-query CCDS DB by Nucleotide ID:NM_001244692Re-query CCDS DB by Protein ID:NP_001231621Link to BLAST:NP_001231621.1
Original member Current member NCBI NM_001244693.1 NP_001231622.1 Accepted alive Link to Nucleotide Sequence:NM_001244693.1Link to Protein Sequence:NP_001231622.1Re-query CCDS DB by Nucleotide ID:NM_001244693Re-query CCDS DB by Protein ID:NP_001231622Link to BLAST:NP_001231622.1
Original member Current member NCBI NM_173868.2 NP_776293.1 Accepted alive Link to Nucleotide Sequence:NM_173868.2Link to Protein Sequence:NP_776293.1Re-query CCDS DB by Nucleotide ID:NM_173868Re-query CCDS DB by Protein ID:NP_776293Link to BLAST:NP_776293.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001231621.1 1045 Q80TY4 1045 100% 0 0
NP_001231622.1 1045 Q80TY4 1045 100% 0 0
NP_776293.1 1045 Q80TY4 1045 100% 0 0

Chromosomal Locations for CCDS 14810.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 6768898 6768952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6770944 6770974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6795386 6795576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6802320 6803105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6807543 6807677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6809277 6809367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6810574 6810678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6817603 6817796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6819934 6820145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6827776 6828021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6833563 6833678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6842139 6842201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6842873 6842941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6844121 6844183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6844291 6844371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6845571 6845792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6848907 6848995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6855369 6855472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6857300 6857443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6858460 6858600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3138 nt):
ATGGATGCCGAGGTTGAAGATAAAACGTTGCATACTCTTTCAAAAGGAACTGAAGTTCCAATGGATTCTC
TGATCCCAGAGCTCAGGGTTCCATATGATTGCTCTATGGCGAAGAAGAGGAGAGCTGAAGAGCAGGCATC
GGGAGTTCCAATTAACAAGAGGAAATCTCTGCTAATGAAACCCCGGCACTACAGCCCAGACATGGGCTGC
AAGGAAAGCCCAGACAACAGGAACGAGGATGATGGCCTCCTAGAAACAAACGACCATGCCACTGCAGATG
AAATCATGGTAAAATCCATGGATGAAACTCTTCATTTACCTGCACAAGACAGCTCACTCCAGAAGAAAGA
CCAATACACATGTTATCCAGAGCTCATGGTCAAATCTCTGGTGCACTTAGGCAAATTTGAGGAAAGTGAG
TCTGTGCAGACCACATGTGAGAACTTAAATGGCAGCAGTATCCAGTCTTTAAAAGCAGAGAGTGATGAAG
CACATGAAGGTTCTATGGTTCATTCCGACAATGGAAGAGACAAAGTCCACCATTCCCAGCCACCTTTCTG
CTCTTCTGGTGACAGCGAAAGTGACTCTGACAGTGCAGAGAATGGGTGGGGCAATGGCTCCAACTCATCA
GAAGACACTGACACTCACAAAGGCCCCAAACACAAGCTGACATACAATAGAAAGGACCTGTTGGAAGTTC
CTGAGATAAAAGCTGAAGATGACAAGTTTATCCCTTGTGAGAACAGGTGTGATTCTGACACAGATGGGAG
AGACCCACAGAACTCTCATATGGAACCCTTGGTTGTGAAAGCCCAGCCTTCCTTCCCAGAGGTTGAAGAG
GGTGAGAGCCTGGCCACAGTAACAGAAGAGCCTGCTGAGGTGGAGAAAGCAAAGGGGAACCTGAGTTTGC
TGGAACAGGCTATTGCTCTACAGGCTGAACGAGGTTCTGTCTTCCATCACACTTATAAGGAGCTGGACCG
ATTTTTCCTGGACCACCTGGCAAGGGAACGGAGGCAACCTAGAGTTACTGATGCCAATGGAAGACAAATC
TTTACTAATAAACATTCACCAAGACCTGAAAGGAGGGAGGCCAAGTGCCCCATTCCTGGCTGTGATGGCA
CGGGGCACGTAACAGGGCTCTACCCTCACCACCGCAGCCTTTCTGGGTGCCCCCACAAAGTGCGAGTTCC
TCTGGAAATTCTCGCCATGCATGAGAACGTGCTCAAGTGTCCCACGCCAGGATGCACAGGAAGGGGACAT
GTGAACAGCAATCGCAACACTCACAGAAGTCTTTCTGGTTGTCCGATTGCTGCAGCTGAAAAGCTGGCAA
TGACCCAGGACAAAAGTCAACTTGATTCTTCTCAGACGGGGCAGTGTCCTGAGCAGGCACACAGGGTGAA
TTTGGTGAAGCAAATTGAATTTAATTTCCGCTCACATGCCATCACTTCTCCAAGAGCCTCTGCATCAAAA
GAACAAGAGAAGTTTGGGAAAGTACCGTTTGATTATGCCAGTTTTGATGCACAAGTATTTGGGAAACGTC
CTCTCCTACAAACAGGGCAAGGACAAAAAGCACCACCATTTCCTGAATCAAAGCATTTTTCAAATCCAGT
GAAATTTCCTAATGGACTGCCTAGTGCTGGCGCCCACACACAGAGCACAGTCCGTGCCAGCTCTTATGGC
CATGGTCAGTACAGTGAAGACACCCACATAGCAGCAGCTGCTGCCATCCTGAACCTTTCCACCCGCTGCA
GGGAAGCCACAGACATCCTCTCCAACAAACCACAAAGCCTGCGTGCCAAGGGAGCTGAGATAGAAGTAGA
TGAAAACGGCACATTGGACTTAAGCATGAAAAAAAATCGAATCCACGACAAGTCTATACCCCCAACTTCC
TCACCTACTACAATTACAACCCCATCCTCATCCCCATTCAACGCAAGCAGCCTTCTGGTCAATGCTGCCT
TCTATCAGGCCCTCTCTGATCAAGAAGGCTGGAATGTGCCCATCAACTATAGCAAATCCCATGGGAAGAC
AGAGGAGGAGAAAGAGAAAGATCCTGTGAACTTCCTAGAAAATTTAGAGGAAAAAAAGTTTGCTGGAGAG
GCCTCTATCCCAAGCCCAAAGCCCAAGCTGCATACAAGAGATCTCAAGAAAGAATTAATCACCTGTCCAA
CACCAGGATGTGATGGAAGCGGCCATGTCACAGGCAACTATGCATCTCACCGCAGTGTCTCTGGATGTCC
TCTAGCAGATAAGACTCTGAAGTCTCTCATGGCTGCCAACTCTCAAGAGCTTAAGTGTCCAACCCCAGGT
TGTGATGGTTCTGGTCATGTGACTGGAAACTATGCCTCCCACCGAAGCTTGTCTGGTTGCCCTCGTGCAA
GGAAAGGTGGCATCAAAATGACCCCAACAAAAGAAGAAAAAGAAGACTCTGAACTTAGATGCCCTGTAAT
AGGGTGTGACGGCCAAGGCCACATATCAGGTAAATACACATCACACCGCACAGCTTCTGGCTGTCCTCTG
GCTGCCAAAAGACAGAAAGAGAATCCCCTCAATGGGGCACCTCTCTCCTGGAAACTGAACAAGCAAGAGC
TTCCTCACTGTCCTCTGCCAGGATGCAATGGTCTGGGTCATGTAAACAACGTTTTTGTCACCCACAGAAG
CTTATCTGGATGCCCTCTTAATGCACAAGCTATCAAAAAAGTCAAGGTCTCTGAGGAACTAATGACTATC
AAGCTCAAAGCAACTGGGGGTATTGATGGTGATGAAGAAATTAGGCATCTGGATGAAGAAATCAAGGAAC
TGAATGAATCCAACCTTAAAATTGAAGCAGATATGATGAAACTTCAGACCCAGATAACATCTATGGAGAG
CAACTTGAAGACCATAGAGGAGGAGAACAAGCTTATAGAACAGAGCAATGAGAGTCTGCTGAAGGAGCTG
GCAGGGCTTAGCCAGGCTCTCATCTCCAGCCTTGCTGACATCCAACTTCCACAGATGGGGCCTATCAATG
AGCAGAATTTTGAAGCATATGTAAATACTCTCACAGACATGTACAGCAATCTGGAACAGGACTATTCCCC
AGAATGCAAAGCTCTACTGGAAAGCATCAAGCAGGCGGTGAAGGGCATCCATGTGTAG

Translation (1045 aa):
MDAEVEDKTLHTLSKGTEVPMDSLIPELRVPYDCSMAKKRRAEEQASGVPINKRKSLLMKPRHYSPDMGC
KESPDNRNEDDGLLETNDHATADEIMVKSMDETLHLPAQDSSLQKKDQYTCYPELMVKSLVHLGKFEESE
SVQTTCENLNGSSIQSLKAESDEAHEGSMVHSDNGRDKVHHSQPPFCSSGDSESDSDSAENGWGNGSNSS
EDTDTHKGPKHKLTYNRKDLLEVPEIKAEDDKFIPCENRCDSDTDGRDPQNSHMEPLVVKAQPSFPEVEE
GESLATVTEEPAEVEKAKGNLSLLEQAIALQAERGSVFHHTYKELDRFFLDHLARERRQPRVTDANGRQI
FTNKHSPRPERREAKCPIPGCDGTGHVTGLYPHHRSLSGCPHKVRVPLEILAMHENVLKCPTPGCTGRGH
VNSNRNTHRSLSGCPIAAAEKLAMTQDKSQLDSSQTGQCPEQAHRVNLVKQIEFNFRSHAITSPRASASK
EQEKFGKVPFDYASFDAQVFGKRPLLQTGQGQKAPPFPESKHFSNPVKFPNGLPSAGAHTQSTVRASSYG
HGQYSEDTHIAAAAAILNLSTRCREATDILSNKPQSLRAKGAEIEVDENGTLDLSMKKNRIHDKSIPPTS
SPTTITTPSSSPFNASSLLVNAAFYQALSDQEGWNVPINYSKSHGKTEEEKEKDPVNFLENLEEKKFAGE
ASIPSPKPKLHTRDLKKELITCPTPGCDGSGHVTGNYASHRSVSGCPLADKTLKSLMAANSQELKCPTPG
CDGSGHVTGNYASHRSLSGCPRARKGGIKMTPTKEEKEDSELRCPVIGCDGQGHISGKYTSHRTASGCPL
AAKRQKENPLNGAPLSWKLNKQELPHCPLPGCNGLGHVNNVFVTHRSLSGCPLNAQAIKKVKVSEELMTI
KLKATGGIDGDEEIRHLDEEIKELNESNLKIEADMMKLQTQITSMESNLKTIEEENKLIEQSNESLLKEL
AGLSQALISSLADIQLPQMGPINEQNFEAYVNTLTDMYSNLEQDYSPECKALLESIKQAVKGIHV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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