NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS50438.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50438.1 Public Mus musculus 19 4933411K16Rik 23 108 98 CCDS HistoryNCBI Gene:66765Re-query CCDS DB by CCDS ID:50438.1Re-query CCDS DB by GeneID:66765See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50438.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000164518.3 ENSMUSP00000131279.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164518.3Link to Ensembl Protein Viewer:ENSMUSP00000131279.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000164518Re-query CCDS DB by Protein ID:ENSMUSP00000131279
Original member Current member NCBI NM_025752.2 NP_080028.1 Accepted alive Link to Nucleotide Sequence:NM_025752.2Link to Protein Sequence:NP_080028.1Re-query CCDS DB by Nucleotide ID:NM_025752Re-query CCDS DB by Protein ID:NP_080028Link to BLAST:NP_080028.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080028.1 304 Q80Y39 304 100% 0 0

Chromosomal Locations for CCDS 50438.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 42052432 42053346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (915 nt):
ATGCTGTGGGCTCACAGGAAGAAAAGGAAGGCAGCCACTGAGACTACAGAAGACAAGCCTCTGGAATCCC
ACCGAGCAAATGACAGCTGGATCAAATCTCACTTCAGCCGCCTATCCGAGGAGAGGTTGCCCACCTACCG
CTATGTCAGCAACAATGGCCACTCACCTGAAAGCAGGCATGGGGAAGTCAATACCACCCTCCACGTGGAT
ACCCTCACCACCAAACACGGAGAAAGGGGCGCGGCTCTGCACCGAGATTCGTTTGCCAGCAAACAGAAGA
TATCTGGAAGCTCAATGACCAAAGAGATGCAGAGGGAGTCAGGGAAGTCCCCGTCCATGGAGGATGACAC
CTGGGCTGCTGTGGCAGCTTGTACGAAGGAGATTGATGCCAAGGGGCATCGCGTGGCTAACTCCATGCTG
CAGCGCTCCACAACTCACCGTCGTAAAGGCCATGCAGAATCCAGGAACATCAGCCCAGAAGAGCTGAAGG
CTCTGGAGGAGGTGGAGATAAAACTGAAAGGGAATTTCCTAACTCACCATGAAACTGGAGTAGCTGGGGC
CAACCAATCGCACACAGTCTATAGCCAGAGTCGCCATAGTAACCAAAGCCACCATTCCTATCCAAGCCAC
CAGAGCAACCAGAGTCATCCCGTTTACTCCAGCTACCAGGGTCATCATCCAAGTCACTTGAGCCCCCAGA
GTTATCCAAGTTACTCAAGTCACCAGAGTCATCCGGGCCACTCCAACCACCAGGGTCATTCAGGCCTCTC
AAGCCACCAGACTCATCTGGGCCACTCCAACCACCAGGGTCATCCAGGTCACTCGAGTCACCAGAGTCAC
CAGGGTCAGCCAGGTCACCCAAGCCACCAGAGCCATAATCTGCCCAACCGCAGAAACCCAATCTATGGCT
CTTGA

Translation (304 aa):
MLWAHRKKRKAATETTEDKPLESHRANDSWIKSHFSRLSEERLPTYRYVSNNGHSPESRHGEVNTTLHVD
TLTTKHGERGAALHRDSFASKQKISGSSMTKEMQRESGKSPSMEDDTWAAVAACTKEIDAKGHRVANSML
QRSTTHRRKGHAESRNISPEELKALEEVEIKLKGNFLTHHETGVAGANQSHTVYSQSRHSNQSHHSYPSH
QSNQSHPVYSSYQGHHPSHLSPQSYPSYSSHQSHPGHSNHQGHSGLSSHQTHLGHSNHQGHPGHSSHQSH
QGQPGHPSHQSHNLPNRRNPIYGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH