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Report for CCDS85218.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85218.1 Public Mus musculus 7 Bsph1 23 108 98 CCDS HistoryNCBI Gene:330470Re-query CCDS DB by CCDS ID:85218.1Re-query CCDS DB by GeneID:330470See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85218.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000204715.1 ENSMUSP00000144997.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000204715.1Link to Ensembl Protein Viewer:ENSMUSP00000144997.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000204715Re-query CCDS DB by Protein ID:ENSMUSP00000144997
Original member Current member NCBI NM_001301682.1 NP_001288611.1 Accepted alive Link to Nucleotide Sequence:NM_001301682.1Link to Protein Sequence:NP_001288611.1Re-query CCDS DB by Nucleotide ID:NM_001301682Re-query CCDS DB by Protein ID:NP_001288611Link to BLAST:NP_001288611.1

Chromosomal Locations for CCDS 85218.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 13450914 13450986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13458255 13458275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13472136 13472267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13472957 13473102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (372 nt):
ATGGCCCAGCCTTTGGATTTTCTATTGGTTTCAATCTGCCTGTTTCACAGCCTTTTCAGTTTTCAAGTAG
AAGATTATTATGCACCAACTATAGATGGTGCATGTGTCTTTCCGTTCTTGTATAGAAGTGAAATATTCTA
TGACTGTGTCAATTTCAATCTGAAACACAAGTGGTGTTCTTTGAACAAGACTTACCAAGGTTACTGGAAA
TACTGTGCTCTTTCAGACTATGCTCCATGTGCCTTTCCCTTCTGGTACAGACATATGATCTACTGGGATT
GCACAGAGGATGGAGAGGTGTTTGGGAAAAAGTGGTGTTCACTCACCCCAAATTACAACAAAGACCAAGT
TTGGAAATATTGTATAGAGTGA

Translation (123 aa):
MAQPLDFLLVSICLFHSLFSFQVEDYYAPTIDGACVFPFLYRSEIFYDCVNFNLKHKWCSLNKTYQGYWK
YCALSDYAPCAFPFWYRHMIYWDCTEDGEVFGKKWCSLTPNYNKDQVWKYCIE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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