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Report for CCDS84452.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84452.1 Public Mus musculus 19 Sorcs1 23 108 98 CCDS HistoryNCBI Gene:58178Re-query CCDS DB by CCDS ID:84452.1Re-query CCDS DB by GeneID:58178See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84452.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000209413.1 ENSMUSP00000147463.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000209413.1Link to Ensembl Protein Viewer:ENSMUSP00000147463.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000209413Re-query CCDS DB by Protein ID:ENSMUSP00000147463
Original member NCBI NM_001252501.1 NP_001239430.1 Updated not alive Link to Nucleotide Sequence:NM_001252501.1Link to Protein Sequence:NP_001239430.1Re-query CCDS DB by Nucleotide ID:NM_001252501Re-query CCDS DB by Protein ID:NP_001239430
Current member NCBI NM_001252501.2 NP_001239430.1 Accepted alive Link to Nucleotide Sequence:NM_001252501.2Link to Protein Sequence:NP_001239430.1Re-query CCDS DB by Nucleotide ID:NM_001252501Re-query CCDS DB by Protein ID:NP_001239430Link to BLAST:NP_001239430.1

Chromosomal Locations for CCDS 84452.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 50143940 50144147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 50153054 50153159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 50168519 50168618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 50175050 50175181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 50176059 50176171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 50181402 50181525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 50182653 50182786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 50190021 50190207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 50210649 50210820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 50222123 50222236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 50225099 50225229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 50226742 50226859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 50228200 50228307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 50230211 50230302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 50232271 50232347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 50232615 50232717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 50241948 50242094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 50252534 50252713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 50259754 50259843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 50262249 50262367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 50288089 50288153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 50312966 50313039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 50333459 50333617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 50378897 50378996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 50475385 50475452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 50677911 50678468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3579 nt):
ATGGGAAAAGTTGGCGCTGGAGACGGCTCCTCGGCCGGGCTGAGCGCGCTCCTTGCAGGAGCGGGGCTTC
TGATGCTCTTAGCCCCCGGCGTCTGCAGCAGCCTCTCTTGCTGCCCTCCGCAGCACCCTAGCTCGACCCC
ACGCCGGACCCTTACCCCAAGAGGCTTTCCTCACCCGGGACCTCTGGGTCGGGCTCCTGCCACGCCCCCG
CCCCTCTTCATGAGACCCCTGTTCGCAGTGGCCCCCGGGGACCGTGCGCTGTTTCTGGAGCGAGCTGGGG
GCAGCAGGGTGTCAGTGGCGACCGCTGCACGCTCTGGCCGTAGGAGACGGAGTGGAACGGAACCCGAGAA
GATTGAACCCGGAGAGGGTGCGAGTCGGAGCCGCCGGGACATGCTAAAGGATGGAGGGCAGCAGGGGCTT
GGGACTGGCGCACGGGACCCGGACAAAGCCACCCGCTTCCGGATGGAGGAGCTGAGACTGACCAGCACCA
CATTTGCTCTGACAGGAGACTCAGCACACAACCAAGCTATGGTCCACTGGTCTGGCCACAACAGCAGCGT
GATTCTCATTTTGACAAAGCTCTATGACTATAACCTGGGGAGTATCACCGAGAGCTCGCTTTGGAGGTCA
ACCGATTATGGGACTACCTATGAAAAGTTGAATGATAAAGTGGGGTTGAAGACAATTTTGAGCTATCTCT
ATGTGTGTCCAACCAACAAGCGTAAGATTATGTTACTCACAGACCCGGAGATTGAGAGCAGTTTGTTGAT
CAGCTCAGATGAAGGGGCAACCTATCAAAAGTACCGGCTCAACTTTTACATTCAGAGTTTGCTTTTCCAT
CCGAAGCAAGAAGACTGGATCCTGGCATACAGTCAAGACCAAAAGTTATACAGCTCTGCTGAGTTTGGCC
GAAGATGGCAGCTTATCCAGGAATCAGTGGTACCAAATAGGTTCTACTGGTCTGTGATGGGGTCGAGCAA
AGAACCAGACCTTGTGCATCTCGAGGCCAGGACTGTGGATGGTCACTCAATATACCTAACTTGTCGGATG
CAAAACTGCACTGAAGCCAACAGAAATAAGCCTTTCCCAGGTTACATCGACCCGGACTCTTTGATTGTTC
AGGACGATTATGTGTTTGTTCAGCTGACATCAGGAGGAAGACCACATTACTATGTGTCCTACCGAAGAAG
CCCGTTTGCACAAATGAAGCTTCCGAAATACGCTTTGCCCAAGGACATGCACGTCATTAGCACAGACGAG
AACCAAGTGTTTGCAGCCGTTCAAGAATGGAACCAGAACGACACCTACAACCTCTACATCTCAGACACAC
GAGGAGTCTACTTCACACTGGCCTTGGAGAATGTGCAGAGCAGCAGAGGCCCTGAAGGCAACGTCATGAT
TGACCTTTATGAGGTAGCAGGGATAAAGGGAATGTTCTTGGCTAACAAGAAGATTGACAACCAAGTGAAG
ACTTTCATCACTTACAACAAAGGCAGAGACTGGCGGTTGCTGCAGGCTCCAGATGCAGATCTAAGGGGGG
ACCCTGTGCACTGTTTGCTGCCCTACTGTTCGCTACACCTTCACCTGAAGGTTTCTGAGAATCCCTACAC
ATCCGGGATCATTGCCAGCAGAGACACAGCCCCAAGTATTATAGTTGCATCAGGTAACATAGGCTCTGAG
TTGTCAGACAGTGACATCAGCATGTTTGTATCTTCAGATGCAGGGAACACTTGGAGGCAGATTTTTGAAG
AAGAGCACAGCATTTTGTACCTTGACCAAGGTGGAGTCCTTGTTGCTATGAAACACACATCTCTCCCAAT
TCGACACCTTTGGTTGAGTTTTGATGAAGGGAGATCTTGGAGCAAATACAGCTTTACATCCATTCCACTC
TTTGTGGATGGAGTCCTGGGGGAGCCTGGAGAAGAGACACTAATCATGACAGTGTTTGGACACTTCAGTC
ATCGTTCCGAATGGCAGCTGGTCAAAGTGGACTACAAGTCCATTTTTGATAGACGCTGTGCTGAAGAAGA
CTACAGACCCTGGCAGTTGCATAGTCAGGGGGAAGCATGCATCATGGGAGCCAAGAGGATATACAAGAAG
AGAAAGTCTGAGCGCAAGTGTATGCAAGGAAAGTATGCGGGAGCAATGGAGTCTGAGCCTTGTGTTTGTA
CAGAGGCAGACTTTGACTGTGACTATGGCTATGAGAGACATAGTAATGGACAATGCCTGCCAGCATTTTG
GTTCAACCCATCCTCACTGTCAAAAGACTGCAGCTTGGGACAGAGTTACCTCAACAGCACTGGGTATAGG
AAGGTGGTCTCCAATAATTGTACTGATGGAGTGAGAGAGCAGTATACCGCCAAACCACAGAAGTGTCCAG
GGAAGGCCCCTCGTGGGCTGCGGATTGTCACTGCAGATGGGAAACTGACAGCAGAGCAGGGCCACAATGT
CACTCTCATGGTGCAGCTGGAAGAGGGTGATGTGCAGCGGACACTCATCCAAGTGGACTTCGGAGATGGC
ATTGCAGTATCGTATGTCAACCTCAGCTCTATGGAAGACGGTATCAAGCACGTATATCAGAATGTGGGCA
TTTTCCGAGTGACCGTGCAGGTGGACAACAGTCTGGGGTCTGACAGCGCCGTCCTGTACTTACATGTAAC
TTGTCCCCTGGAGCATGTGCACCTGTCTCTTCCTTTTGTCACAACAAAGAACAAAGAGGTCAATGCAACT
GCAGTGCTTTGGCCCAGCCAAGTGGGCACTCTCACTTACGTGTGGTGGTATGGGAACAACACAGAGCCCC
TGATCACCTTGGAGGGAAGCATATCGTTCAAGTTTACTTCTGAAGGAATGAATACTATCACAGTCCAAGT
CTCTGCTGGGAACGCCATACTGCAAGACACAAAGACCATTGCGGTATATGAGGAATTTCGGTCTCTTCGC
TTGGCCTTTTCTCCGAACTTGGATGACTACAACCCTGACATCCCGGAGTGGAGGAGGGACATCAGCCGAG
TCATCAAAAAGTCTCTGGTGGAAGCCACAGGGATTCCCAGCCAGCATATCCTGGTGGCGGTGTTACCTGG
CTTACCCACTGCTGCAGAGCTCTTTGTTTTGCCCTACCAAGATGGAACCAGAGAAAACAAAAGGTCGCCT
GAGGACCTGGAGCAGATATCTGAAGTTCTAATCCACAAACTCAACCAAAACTTGGTGCACTTCGAGCTGA
AGCCTGGCGTCCAAGTTCTTGTCCACGCAGCTCACCTGACAGCAGCTCCACTGGTGGACCTCACTCCTAC
CCACAGCGGATCTGCCATGCTGATGTTGCTCTCTGTGGTGTTTGTGGGGCTCGCTGTATTCGTCATCTAC
AAGTTTAAAAGAGGCTGGAGAGATCGCTCAGCAGTTAAGAACATTGGCTGCTCTTGCAGAGGACCCGGGT
TCAATTCTCAGCACCAACAAGGTGGCTCACAAGCATCTGTAACTTCAGTTCCAAGAGATCCGACACCCTC
TTCTGACCTTCATGGGCACCAAGAACACACGTGGTGCACAGATATACACCCAGGAAAAACACCCATACAC
ATAAAATAA

Translation (1192 aa):
MGKVGAGDGSSAGLSALLAGAGLLMLLAPGVCSSLSCCPPQHPSSTPRRTLTPRGFPHPGPLGRAPATPP
PLFMRPLFAVAPGDRALFLERAGGSRVSVATAARSGRRRRSGTEPEKIEPGEGASRSRRDMLKDGGQQGL
GTGARDPDKATRFRMEELRLTSTTFALTGDSAHNQAMVHWSGHNSSVILILTKLYDYNLGSITESSLWRS
TDYGTTYEKLNDKVGLKTILSYLYVCPTNKRKIMLLTDPEIESSLLISSDEGATYQKYRLNFYIQSLLFH
PKQEDWILAYSQDQKLYSSAEFGRRWQLIQESVVPNRFYWSVMGSSKEPDLVHLEARTVDGHSIYLTCRM
QNCTEANRNKPFPGYIDPDSLIVQDDYVFVQLTSGGRPHYYVSYRRSPFAQMKLPKYALPKDMHVISTDE
NQVFAAVQEWNQNDTYNLYISDTRGVYFTLALENVQSSRGPEGNVMIDLYEVAGIKGMFLANKKIDNQVK
TFITYNKGRDWRLLQAPDADLRGDPVHCLLPYCSLHLHLKVSENPYTSGIIASRDTAPSIIVASGNIGSE
LSDSDISMFVSSDAGNTWRQIFEEEHSILYLDQGGVLVAMKHTSLPIRHLWLSFDEGRSWSKYSFTSIPL
FVDGVLGEPGEETLIMTVFGHFSHRSEWQLVKVDYKSIFDRRCAEEDYRPWQLHSQGEACIMGAKRIYKK
RKSERKCMQGKYAGAMESEPCVCTEADFDCDYGYERHSNGQCLPAFWFNPSSLSKDCSLGQSYLNSTGYR
KVVSNNCTDGVREQYTAKPQKCPGKAPRGLRIVTADGKLTAEQGHNVTLMVQLEEGDVQRTLIQVDFGDG
IAVSYVNLSSMEDGIKHVYQNVGIFRVTVQVDNSLGSDSAVLYLHVTCPLEHVHLSLPFVTTKNKEVNAT
AVLWPSQVGTLTYVWWYGNNTEPLITLEGSISFKFTSEGMNTITVQVSAGNAILQDTKTIAVYEEFRSLR
LAFSPNLDDYNPDIPEWRRDISRVIKKSLVEATGIPSQHILVAVLPGLPTAAELFVLPYQDGTRENKRSP
EDLEQISEVLIHKLNQNLVHFELKPGVQVLVHAAHLTAAPLVDLTPTHSGSAMLMLLSVVFVGLAVFVIY
KFKRGWRDRSAVKNIGCSCRGPGFNSQHQQGGSQASVTSVPRDPTPSSDLHGHQEHTWCTDIHPGKTPIH
IK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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