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Report for CCDS28250.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28250.1 Public Mus musculus 16 Or5ac17 23 108 98 CCDS HistoryNCBI Gene:404310Re-query CCDS DB by CCDS ID:28250.1Re-query CCDS DB by GeneID:404310See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28250.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099657.4 ENSMUSP00000097249.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099657.4Link to Ensembl Protein Viewer:ENSMUSP00000097249.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000099657Re-query CCDS DB by Protein ID:ENSMUSP00000097249
Original member Current member EBI ENSMUST00000214186.1 ENSMUSP00000150643.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214186.1Link to Ensembl Protein Viewer:ENSMUSP00000150643.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214186Re-query CCDS DB by Protein ID:ENSMUSP00000150643
Original member Current member NCBI NM_207550.2 NP_997433.2 Accepted alive Link to Nucleotide Sequence:NM_207550.2Link to Protein Sequence:NP_997433.2Re-query CCDS DB by Nucleotide ID:NM_207550Re-query CCDS DB by Protein ID:NP_997433Link to BLAST:NP_997433.2

Chromosomal Locations for CCDS 28250.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 59215685 59216611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (927 nt):
ATGGCAGAAGGAAACCGCACTCTGATCACTGAATTTATCTTCATGGGACTCACCGACCATCCCAAGTTAA
AGGCTGCCCTGTTCCCACTGTTCCTTGTCATCTACCTCATCACCATGGTGGGAAATCTCGGACTGATTGC
TCTCATCTGGAAGGACTCTCACCTCCACACCCCTATGTACTTATTCCTCAGCAGCCTGGCCTTTGCTGAC
TCATGCACTACATCCTCTGTGACTCCCAAAATGCTTCTCAACTTTTTATCTACAAATCATGAGATAACCC
TGGCTGAGTGCTTTGTTCAATTTTATTTTATGGGTTCCAGTGCAACCACGGAATGCTTTCTCCTTTCTGT
GATGGCCTATGACCGCTATCTGGCCATTTGTAACCCCTTGCTTTATCGAGTGTTGATGTCTAATAGACTC
TGTACTCAGTTTATAGCCGTGGCATACTTACTTGGTGCTCTGCACTTGGCAATTCACGTGGGTTTGTTAC
TTAGACTGACTTTCTGCAGATCCAACATTATACAATATTACTATTGTGAAATTTTACAACTTTTCAACAT
TTCTTGCATTGATCCAACAATTAACGTGTTTGTGCTTTTAATCCTTGCAACTTCTATACAAGTCTTCACA
TTTGTAACCGTCTTGGTTTCATATATCCGTGTCCTCTTTGCCATCCTGAGAAAGAAGTCTGATAAGGGCA
GAAGCAAAGCCTTCTCCACATGCAGTGCCCATCTACTCTCTGTCTCTTTGTTCTACGGAACTCTTTTTCT
CATTTATGTTTGTCCTGGGTCTGGGCCTGTGGGAGACAAAGAGAAAATGCTTTCTTTATTTTATACAGTC
ATAATTCCTTTGCTCAACCCATTTGTTTACAGTCTGAGAAACAAAGAGGTTATAGGTGCTTTTAGAAGAG
TAATGAAGAATACCTGA

Translation (308 aa):
MAEGNRTLITEFIFMGLTDHPKLKAALFPLFLVIYLITMVGNLGLIALIWKDSHLHTPMYLFLSSLAFAD
SCTTSSVTPKMLLNFLSTNHEITLAECFVQFYFMGSSATTECFLLSVMAYDRYLAICNPLLYRVLMSNRL
CTQFIAVAYLLGALHLAIHVGLLLRLTFCRSNIIQYYYCEILQLFNISCIDPTINVFVLLILATSIQVFT
FVTVLVSYIRVLFAILRKKSDKGRSKAFSTCSAHLLSVSLFYGTLFLIYVCPGSGPVGDKEKMLSLFYTV
IIPLLNPFVYSLRNKEVIGAFRRVMKNT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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