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Report for CCDS28735.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28735.1 Public Mus musculus 17 Or2h2 23 108 98 CCDS HistoryNCBI Gene:258469Re-query CCDS DB by CCDS ID:28735.1Re-query CCDS DB by GeneID:258469See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28735.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000070808.2 ENSMUSP00000065322.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070808.2Link to Ensembl Protein Viewer:ENSMUSP00000065322.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000070808Re-query CCDS DB by Protein ID:ENSMUSP00000065322
Original member Current member EBI ENSMUST00000216488.1 ENSMUSP00000149544.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216488.1Link to Ensembl Protein Viewer:ENSMUSP00000149544.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216488Re-query CCDS DB by Protein ID:ENSMUSP00000149544
Original member Current member EBI ENSMUST00000217397.1 ENSMUSP00000150119.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217397.1Link to Ensembl Protein Viewer:ENSMUSP00000150119.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217397Re-query CCDS DB by Protein ID:ENSMUSP00000150119
Original member Current member EBI ENSMUST00000215195.1 ENSMUSP00000150769.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215195.1Link to Ensembl Protein Viewer:ENSMUSP00000150769.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215195Re-query CCDS DB by Protein ID:ENSMUSP00000150769
Original member Current member NCBI NM_146477.2 NP_666688.2 Accepted alive Link to Nucleotide Sequence:NM_146477.2Link to Protein Sequence:NP_666688.2Re-query CCDS DB by Nucleotide ID:NM_146477Re-query CCDS DB by Protein ID:NP_666688Link to BLAST:NP_666688.2

Chromosomal Locations for CCDS 28735.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 37085231 37086163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGGTCAACCAGAGCTCCCCCGTGGGCTTCCTCCTGCTGGGCTTCTCTGAACACCCACAACTGGAAAAGG
TTCTCTTCGTCGTTGTCTTGTGCTCCTACCTCCTCACCCTCCTAGGAAACACACTAATCCTCCTGCTGTC
CACCCTGGATCCCAGGCTCCACTCTCCAATGTACTTCTTCCTCTCTAACCTCTCCTTCTTGGACCTCTGC
TTCACCACAACCTGTGTCCCCCAGATGCTGTTCAACCTCTGGGGCCCCGAAAAGACCATCAGCTTCCTGG
GATGCTTTGTCCAGCTCTTCATCTTCTTATCTCTGGGGACGACGGAGTGCATCCTGCTAGCAGTGATGGC
CTTTGACCGCTATGTGGCTGTGTGCCAGCCCCTGCACTATGCCACCATCATCCACCCTCGCCTGTGTTGC
CAGCTGGCAGCTGTGGCCTGGACGATTGGCCTAGTGGAGTCAGTAGTTCAGACGCCATCCACTCTGCGCC
TGCCCTTCTGTCCCCACCATCAGGTTGACGACTTTGTGTGTGAGGTCCCTGCTTTGATTCGACTGTCCTG
TGGGGACACCACCTATAATGAGATACAAATGGCTATTGCCAGTGTCTTCATCTTGGTTGTACCTCTGAGC
CTCATCCTTGTCTCTTATGGTGCCATTGCCAGGGCAGTGCTGAGGATAAGCTCTGCAAAGGGGCGCAGGA
AAGCTTTTGGGACCTGCTCTTCCCACCTCATTGTGGTCACTCTCTTCTACAGCTCAGTCATCGCTGTTTA
TCTGCAGCCCAAGAATCCTTATGCTCGAGAGAGGGGCAAGTTCTTTGGTCTCTTCTATGCTGTGGGAACT
CCTTCTCTTAACCCTCTCATATATACCCTAAGGAACAAGGAAGTAAAGAGGGCATTCAGGAGGCTGCTCT
GGAAGGAAGTGAAGCCCGGCTGA

Translation (310 aa):
MVNQSSPVGFLLLGFSEHPQLEKVLFVVVLCSYLLTLLGNTLILLLSTLDPRLHSPMYFFLSNLSFLDLC
FTTTCVPQMLFNLWGPEKTISFLGCFVQLFIFLSLGTTECILLAVMAFDRYVAVCQPLHYATIIHPRLCC
QLAAVAWTIGLVESVVQTPSTLRLPFCPHHQVDDFVCEVPALIRLSCGDTTYNEIQMAIASVFILVVPLS
LILVSYGAIARAVLRISSAKGRRKAFGTCSSHLIVVTLFYSSVIAVYLQPKNPYARERGKFFGLFYAVGT
PSLNPLIYTLRNKEVKRAFRRLLWKEVKPG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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