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Report for CCDS29674.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29674.1 Public Mus musculus 19 Or9i14 23 108 98 CCDS HistoryNCBI Gene:258792Re-query CCDS DB by CCDS ID:29674.1Re-query CCDS DB by GeneID:258792See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29674.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055672.3 ENSMUSP00000059747.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055672.3Link to Ensembl Protein Viewer:ENSMUSP00000059747.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000055672Re-query CCDS DB by Protein ID:ENSMUSP00000059747
Original member Current member EBI ENSMUST00000216659.1 ENSMUSP00000150330.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216659.1Link to Ensembl Protein Viewer:ENSMUSP00000150330.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216659Re-query CCDS DB by Protein ID:ENSMUSP00000150330
Original member Current member NCBI NM_146796.1 NP_667007.1 Accepted alive Link to Nucleotide Sequence:NM_146796.1Link to Protein Sequence:NP_667007.1Re-query CCDS DB by Nucleotide ID:NM_146796Re-query CCDS DB by Protein ID:NP_667007Link to BLAST:NP_667007.1

Chromosomal Locations for CCDS 29674.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 13814644 13815588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGGACAATAACAACCTCACAACAGTAACTGAATTCATTCTTGTGGGCTTTACTGACCATCCAGAGTGGG
AGGTTCCTCTTTTCCTGGTATTTCTCTGCTTCTATCTGGTCACCATCCTAGGGAACTTGGGCATGGTCAT
TCTTATCCAGATGGATGTCCAGCTTCAGAGCCCAATGTATTTCTTCCTGAGTCATCTCTCTGTGTTGGAT
GCCTGCTACACCAGTGTCATCACCCCTCAGATCCTGGCCATGCTGGCCACAGGTAAAACAGTCATCTCCT
ATAATCATTGTGCTGCCCAGTTCTTCTTTTTCACCTTCTGTGCAAGTACAGAATGTTTCCTGTTGGCAGT
GATGTCCTATGATCGCTATGTTGCTATTAGCAATCCTCTGCTCTACACTGTGGCCATGAGTCCTAAAAAA
TGCTGGAGTTTGGTACTGGTGGCCTATGTATGTGGGTTATCTGGGTCCATTCAAAGAACCACATGTACCT
TCTCTCTTTCCTTCTGTGAAGATAATAAGATCAACTTCTTCTTTTGTGACCTTCCACCCCTCCTGAAGCT
GGCCTGCAGTGATACAACAAATGCTGAGATTATAATTGTTTTGTTTGGGAACTTTGTCATCTTGGTGAAT
GCTTTAGTCATACTCACTTCCTACCTGCTTATCATCAAGACAGTCATGAGGATAAAGTCTTCAGGTGGCA
GAGGTAAAACCTTCTCCACATGTGTCTCCCACCTCACTGCTGTGGCTCTTTTTTTTGGGACCCTCACCTT
CATGTATATAAGAAGTGGTTCAGGGAAATCGCCAGAGGAAGATAAAGTAGTGTCTGTCTTCTATACTGTG
ATCATCCCTATGTTGAACCCTCTGATCTACAGCTTGAGAAATAAAGATGTTAAAGCAGGCTTCAGAAAGC
TCACTAGCAGGCTACAGGTGTCCCAGAGTGTATAA

Translation (314 aa):
MDNNNLTTVTEFILVGFTDHPEWEVPLFLVFLCFYLVTILGNLGMVILIQMDVQLQSPMYFFLSHLSVLD
ACYTSVITPQILAMLATGKTVISYNHCAAQFFFFTFCASTECFLLAVMSYDRYVAISNPLLYTVAMSPKK
CWSLVLVAYVCGLSGSIQRTTCTFSLSFCEDNKINFFFCDLPPLLKLACSDTTNAEIIIVLFGNFVILVN
ALVILTSYLLIIKTVMRIKSSGGRGKTFSTCVSHLTAVALFFGTLTFMYIRSGSGKSPEEDKVVSVFYTV
IIPMLNPLIYSLRNKDVKAGFRKLTSRLQVSQSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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