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Report for CCDS88660.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88660.1 Public Mus musculus 14 Hnrnpc 23 108 98 CCDS HistoryNCBI Gene:15381Re-query CCDS DB by CCDS ID:88660.1Re-query CCDS DB by GeneID:15381See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88660.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000227458.1 ENSMUSP00000154238.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227458.1Link to Ensembl Protein Viewer:ENSMUSP00000154238.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227458Re-query CCDS DB by Protein ID:ENSMUSP00000154238
Original member NCBI NM_001170984.2 NP_001164455.1 Updated not alive Link to Nucleotide Sequence:NM_001170984.2Link to Protein Sequence:NP_001164455.1Re-query CCDS DB by Nucleotide ID:NM_001170984Re-query CCDS DB by Protein ID:NP_001164455
Current member NCBI NM_001170984.3 NP_001164455.1 Accepted alive Link to Nucleotide Sequence:NM_001170984.3Link to Protein Sequence:NP_001164455.1Re-query CCDS DB by Nucleotide ID:NM_001170984Re-query CCDS DB by Protein ID:NP_001164455Link to BLAST:NP_001164455.1
Original member NCBI NM_001360183.1 NP_001347112.1 Updated not alive Link to Nucleotide Sequence:NM_001360183.1Link to Protein Sequence:NP_001347112.1Re-query CCDS DB by Nucleotide ID:NM_001360183Re-query CCDS DB by Protein ID:NP_001347112
Current member NCBI NM_001360183.2 NP_001347112.1 Accepted alive Link to Nucleotide Sequence:NM_001360183.2Link to Protein Sequence:NP_001347112.1Re-query CCDS DB by Nucleotide ID:NM_001360183Re-query CCDS DB by Protein ID:NP_001347112Link to BLAST:NP_001347112.1
Original member NCBI NM_001360184.1 NP_001347113.1 Updated not alive Link to Nucleotide Sequence:NM_001360184.1Link to Protein Sequence:NP_001347113.1Re-query CCDS DB by Nucleotide ID:NM_001360184Re-query CCDS DB by Protein ID:NP_001347113
Current member NCBI NM_001360184.2 NP_001347113.1 Accepted alive Link to Nucleotide Sequence:NM_001360184.2Link to Protein Sequence:NP_001347113.1Re-query CCDS DB by Nucleotide ID:NM_001360184Re-query CCDS DB by Protein ID:NP_001347113Link to BLAST:NP_001347113.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164455.1 292 Q9Z204-4 292 100% 0 0
NP_001347112.1 292 Q9Z204-4 292 100% 0 0
NP_001347113.1 292 Q9Z204-4 292 100% 0 0

Chromosomal Locations for CCDS 88660.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 52075080 52075160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52075255 52075412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52075613 52075726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52077403 52077563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52081260 52081307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52081828 52081903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52084115 52084355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (879 nt):
ATGGCTAGCAATGTTACCAACAAGACAGATCCTCGGTCCATGAATTCCCGTGTATTCATTGGGAATCTCA
ACACTCTGGTGGTCAAGAAGTCTGATGTGGAGGCCATCTTTTCAAAGTATGGCAAAATTGTGGGCTGCTC
TGTGCATAAAGGCTTTGCCTTTGTCCAGTATGTTAATGAAAGAAATGCCCGAGCTGCTGTAGCTGGCGAG
GATGGCAGAATGATTGCTGGCCAGGTTTTAGATATTAACCTGGCTGCAGAGCCAAAAGTGAACCGAGGAA
AAGCAGGTGTGAAACGATCTGCAGCGGAGATGTACGGTTCCTCATTTGACTTGGACTATGACTTTCAACG
GGATTATTATGACAGGATGTACAGTTACCCAGCGCGGGTTCCTCCTCCTCCTCCTATTGCTCGAGCTGTG
GTGCCTTCCAAACGTCAGCGTGTTTCAGGGAACACCTCACGAAGGGGCAAAAGTGGATTCAATTCGAAGA
GTGGACAAAGGGGATCTTCTTCCAAGTCTGGAAAATTGAAAGGTGATGACCTTCAGGCCATTAAAAAGGA
GCTGACTCAGATAAAACAAAAAGTGGATTCTCTTCTGGAAAGCCTGGAAAAAATTGAAAAAGAACAAAGC
AAGCAAGCAGAGATGAAGAATGAAAAGTCTGAAGAAGAGCAGAGCAGCGCCTCTGTGAAGAAAGATGAGA
CTAATGTGAAGATGGAGTCTGAGGCAGGTGCAGATGACTCTGCTGAGGAGGGTGACCTGCTGGATGATGA
CGATAATGAAGATCGGGGGGATGACCAGCTGGAGTTGAAGGATGATGAAAAAGAGCCTGAGGAAGGAGAA
GACGACAGAGACAGCGCCAATGGGGAGGATGACTCTTAA

Translation (292 aa):
MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGE
DGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDFQRDYYDRMYSYPARVPPPPPIARAV
VPSKRQRVSGNTSRRGKSGFNSKSGQRGSSSKSGKLKGDDLQAIKKELTQIKQKVDSLLESLEKIEKEQS
KQAEMKNEKSEEEQSSASVKKDETNVKMESEAGADDSAEEGDLLDDDDNEDRGDDQLELKDDEKEPEEGE
DDRDSANGEDDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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