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Report for CCDS11033.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11033.1 Public Homo sapiens 17 EMC6 24 110 108 CCDS HistoryNCBI Gene:83460Re-query CCDS DB by CCDS ID:11033.1Re-query CCDS DB by GeneID:83460See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11033.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000248378.6 ENSP00000248378.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000248378.6Link to Ensembl Protein Viewer:ENSP00000248378.4Re-query CCDS DB by Nucleotide ID:ENST00000248378Re-query CCDS DB by Protein ID:ENSP00000248378
Original member Current member EBI ENST00000397133.2 ENSP00000380322.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397133.2Link to Ensembl Protein Viewer:ENSP00000380322.1Re-query CCDS DB by Nucleotide ID:ENST00000397133Re-query CCDS DB by Protein ID:ENSP00000380322
Original member Current member NCBI NM_001014764.3 NP_001014764.1 Accepted alive Link to Nucleotide Sequence:NM_001014764.3Link to Protein Sequence:NP_001014764.1Re-query CCDS DB by Nucleotide ID:NM_001014764Re-query CCDS DB by Protein ID:NP_001014764Link to BLAST:NP_001014764.1
Original member Current member NCBI NM_031298.4 NP_112588.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_031298.4Link to Protein Sequence:NP_112588.1Re-query CCDS DB by Nucleotide ID:NM_031298Re-query CCDS DB by Protein ID:NP_112588Link to BLAST:NP_112588.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001014764.1 110 Q9BV81 110 100% 0 0
NP_112588.1 110 Q9BV81 110 100% 0 0

Chromosomal Locations for CCDS 11033.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 3669147 3669479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (333 nt):
ATGGCCGCGGTGGTGGCCAAGCGGGAAGGGCCGCCGTTCATCAGCGAGGCGGCCGTGCGGGGCAACGCCG
CCGTCCTGGATTATTGCCGGACCTCGGTGTCAGCGCTGTCGGGGGCCACGGCCGGCATCCTCGGCCTCAC
CGGCCTCTACGGCTTCATCTTCTACCTGCTCGCCTCCGTCCTGCTCTCCCTGCTCCTCATTCTCAAGGCG
GGAAGGAGGTGGAACAAATATTTCAAATCACGGAGACCTCTCTTTACAGGAGGCCTCATCGGGGGCCTCT
TCACCTACGTCCTGTTCTGGACGTTCCTCTACGGCATGGTGCACGTCTACTGA

Translation (110 aa):
MAAVVAKREGPPFISEAAVRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASVLLSLLLILKA
GRRWNKYFKSRRPLFTGGLIGGLFTYVLFWTFLYGMVHVY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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