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Report for CCDS12303.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12303.1 Public Homo sapiens 19 IL27RA 24 110 108 CCDS HistoryNCBI Gene:9466Re-query CCDS DB by CCDS ID:12303.1Re-query CCDS DB by GeneID:9466See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12303.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000263379.4 ENSP00000263379.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000263379.4Link to Ensembl Protein Viewer:ENSP00000263379.1Re-query CCDS DB by Nucleotide ID:ENST00000263379Re-query CCDS DB by Protein ID:ENSP00000263379
Original member Current member NCBI NM_004843.4 NP_004834.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004843.4Link to Protein Sequence:NP_004834.1Re-query CCDS DB by Nucleotide ID:NM_004843Re-query CCDS DB by Protein ID:NP_004834Link to BLAST:NP_004834.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004834.1 636 Q6UWB1 636 100% 0 0

Chromosomal Locations for CCDS 12303.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 14031873 14031972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 14032386 14032503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 14039508 14039665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 14039753 14039910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 14042453 14042612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 14042716 14042789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 14046154 14046337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 14046430 14046618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 14048981 14049082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 14049156 14049314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 14050758 14050883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 14051607 14051700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 14051880 14051973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 14052096 14052290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1911 nt):
ATGCGGGGAGGCAGGGGCGCCCCTTTCTGGCTGTGGCCGCTGCCCAAGCTGGCGCTGCTGCCTCTGTTGT
GG
GTGCTTTTCCAGCGGACGCGTCCCCAGGGCAGCGCCGGGCCACTGCAGTGCTACGGAGTTGGACCCTT
G
GGCGACTTGAACTGCTCGTGGGAGCCTCTTGGGGACCTGGGAGCCCCCTCCGAGTTACACCTCCAGAGC
CAA
AAGTACCGTTCCAACAAAACCCAGACTGTGGCAGTGGCAGCCGGACGGAGCTGGGTGGCCATTCCTC
GG
GAACAGCTCACCATGTCTGACAAACTCCTTGTCTGGGGCACTAAGGCAGGCCAGCCTCTCTGGCCCCC
C
GTCTTCGTGAACCTAGAAACCCAAATGAAGCCAAACGCCCCCCGGCTGGGCCCTGACGTGGACTTTTCC
GAG
GATGACCCCCTGGAGGCCACTGTCCATTGGGCCCCACCTACATGGCCATCTCATAAAGTTCTGATCT
GC
CAGTTCCACTACCGAAGATGTCAGGAGGCGGCCTGGACCCTGCTGGAACCGGAGCTGAAGACCATACC
C
CTGACCCCTGTTGAGATCCAAGATTTGGAGCTAGCCACTGGCTACAAAGTGTATGGCCGCTGCCGGATG
GAG
AAAGAAGAGGATTTGTGGGGCGAGTGGAGCCCCATTTTGTCCTTCCAGACACCGCCTTCTGCTCCAA
AA
GATGTGTGGGTATCAGGGAACCTCTGTGGGACGCCTGGAGGAGAGGAACCTTTGCTTCTATGGAAGGC
C
CCAGGGCCCTGTGTGCAGGTGAGCTACAAAGTCTGGTTCTGGGTTGGAGGTCGTGAGCTGAGTCCAGAA
GGA
ATTACCTGCTGCTGCTCCCTAATTCCCAGTGGGGCGGAGTGGGCCAGGGTGTCCGCTGTCAACGCCA
CA
AGCTGGGAGCCTCTCACCAACCTCTCTTTGGTCTGCTTGGATTCAGCCTCTGCCCCCCGTAGCGTGGC
A
GTCAGCAGCATCGCTGGGAGCACGGAGCTACTGGTGACCTGGCAACCGGGGCCTGGGGAACCACTGGAG
CAT
GTAGTGGACTGGGCTCGAGATGGGGACCCCCTGGAGAAACTCAACTGGGTCCGGCTTCCCCCTGGGA
AC
CTCAGTGCTCTGTTACCAGGGAATTTCACTGTCGGGGTCCCCTATCGAATCACTGTGACCGCAGTCTC
T
GCTTCAGGCTTGGCCTCTGCATCCTCCGTCTGGGGGTTCAGGGAGGAATTAGCACCCCTAGTGGGGCCA
ACG
CTTTGGCGACTCCAAGATGCCCCTCCAGGGACCCCCGCCATAGCGTGGGGAGAGGTCCCAAGGCACC
AG
CTTCGAGGCCACCTCACCCACTACACCTTGTGTGCACAGAGTGGAACCAGCCCCTCCGTCTGCATGAA
T
GTGAGTGGCAACACACAGAGTGTCACCCTGCCTGACCTTCCTTGGGGTCCCTGTGAGCTGTGGGTGACA
GCA
TCTACCATCGCTGGACAGGGCCCTCCTGGTCCCATCCTCCGGCTTCATCTACCAGATAACACCCTGA
GG
TGGAAAGTTCTGCCGGGCATCCTATTCTTGTGGGGCTTGTTCCTGTTGGGGTGTGGCCTGAGCCTGGC
C
ACCTCTGGAAGGTGCTACCACCTAAGGCACAAAGTGCTGCCCCGCTGGGTCTGGGAGAAAGTTCCTGAT
CCT
GCCAACAGCAGTTCAGGCCAGCCCCACATGGAGCAAGTACCTGAGGCCCAGCCCCTTGGGGACTTGC
CC
ATCCTGGAAGTGGAGGAGATGGAGCCCCCGCCGGTTATGGAGTCCTCCCAGCCCGCCCAGGCCACCGC
C
CCGCTTGACTCTGGGTATGAGAAGCACTTCCTGCCCACACCTGAGGAGCTGGGCCTTCTGGGGCCCCCC
AGG
CCACAGGTTCTGGCCTGA


Translation (636 aa):
MRGGRGAPFWLWPLPKLALLPLLWVLFQRTRPQGSAGPLQCYGVGPLGDLNCSWEPLGDLGAPSELHLQS
Q
K
YRSNKTQTVAVAAGRSWVAIPREQLTMSDKLLVWGTKAGQPLWPPVFVNLETQMKPNAPRLGPDVDFS
E
DDPLEATVHWAPPTWPSHKVLICQFHYRRCQEAAWTL
LEPELKTIPLTPVEIQDLELATGYKVYGRCRM
E
KEEDLWGEWSPILSFQTPPS
APKDVWVSGNLCGTPGGEEPLLLWKAPGPCVQVSYKVWFWVGGRELSPE
G
ITCCCSLIPSGAEWARVSAVNATSWEPLTNLSLVCL
DSASAPRSVAVSSIAGSTELLVTWQPGPGEPLE
H
VVDWARDGDPLEKLNWVRLPPGNLSALLP
GNFTVGVPYRITVTAVSASGLASASSVWGFREELAPLVGP
T
LWRLQDAPPGTPAIAWGEVPRHQLRGHLTHYTLCAQSGTSPSVCMN
VSGNTQSVTLPDLPWGPCELWVT
A
STIAGQGPPGPILRLHLP
DNTLRWKVLPGILFLWGLFLLGCGLSLATSGRCYHLRHKVLPRWVWEKVPD
P
ANSSSGQPHME
QVPEAQPLGDLPILEVEEMEPPPVMESSQPAQATAPLDSGYEKHFLPTPEELGLLGPP
R
PQVLA




Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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