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Report for CCDS246.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
246.1 Public Homo sapiens 1 PNRC2 24 110 108 CCDS HistoryNCBI Gene:55629Re-query CCDS DB by CCDS ID:246.1Re-query CCDS DB by GeneID:55629See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 246.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000334351.8 ENSP00000334840.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000334351.8Link to Ensembl Protein Viewer:ENSP00000334840.7Re-query CCDS DB by Nucleotide ID:ENST00000334351Re-query CCDS DB by Protein ID:ENSP00000334840
Original member Current member EBI ENST00000374468.1 ENSP00000363592.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000374468.1Link to Ensembl Protein Viewer:ENSP00000363592.1Re-query CCDS DB by Nucleotide ID:ENST00000374468Re-query CCDS DB by Protein ID:ENSP00000363592
Original member Current member EBI ENST00000647887.1 ENSP00000497590.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000647887.1Link to Ensembl Protein Viewer:ENSP00000497590.1Re-query CCDS DB by Nucleotide ID:ENST00000647887Re-query CCDS DB by Protein ID:ENSP00000497590
Original member Current member NCBI NM_017761.4 NP_060231.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017761.4Link to Protein Sequence:NP_060231.1Re-query CCDS DB by Nucleotide ID:NM_017761Re-query CCDS DB by Protein ID:NP_060231Link to BLAST:NP_060231.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060231.1 139 Q9NPJ4-1 139 100% 0 0

Chromosomal Locations for CCDS 246.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 23961458 23961877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (420 nt):
ATGGGTGGTGGAGAGAGGTATAACATTCCAGCCCCTCAATCTAGAAATGTTAGTAAGAACCAACAACAGC
TTAACAGACAGAAGACCAAGGAACAGAATTCCCAGATGAAGATTGTTCATAAGAAAAAAGAAAGAGGACA
TGGTTATAACTCATCAGCAGCTGCCTGGCAGGCCATGCAAAATGGGGGGAAGAACAAAAATTTTCCAAAT
AATCAAAGTTGGAATTCTAGCTTATCAGGTCCCAGGTTACTTTTTAAATCTCAAGCTAATCAGAACTATG
CTGGTGCCAAATTTAGTGAGCCGCCATCACCAAGTGTTCTTCCCAAACCACCAAGCCACTGGGTCCCTGT
TTCCTTTAATCCTTCAGATAAGGAAATAATGACATTTCAACTTAAAACCTTACTTAAAGTACAGGTATAA

Translation (139 aa):
MGGGERYNIPAPQSRNVSKNQQQLNRQKTKEQNSQMKIVHKKKERGHGYNSSAAAWQAMQNGGKNKNFPN
NQSWNSSLSGPRLLFKSQANQNYAGAKFSEPPSPSVLPKPPSHWVPVSFNPSDKEIMTFQLKTLLKVQV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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