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Report for CCDS6278.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6278.1 Public Homo sapiens 8 NIPAL2 24 110 108 CCDS HistoryNCBI Gene:79815Re-query CCDS DB by CCDS ID:6278.1Re-query CCDS DB by GeneID:79815See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6278.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000341166.3 ENSP00000339256.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000341166.3Link to Ensembl Protein Viewer:ENSP00000339256.3Re-query CCDS DB by Nucleotide ID:ENST00000341166Re-query CCDS DB by Protein ID:ENSP00000339256
Original member Current member NCBI NM_024759.3 NP_079035.1 Accepted alive Link to Nucleotide Sequence:NM_024759.3Link to Protein Sequence:NP_079035.1Re-query CCDS DB by Nucleotide ID:NM_024759Re-query CCDS DB by Protein ID:NP_079035Link to BLAST:NP_079035.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079035.1 368 Q9H841-1 368 100% 0 0

Chromosomal Locations for CCDS 6278.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 98193051 98193090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 98193385 98193412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 98194728 98194822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 98195942 98196005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 98203108 98203196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 98205111 98205246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 98212405 98212501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 98222479 98222600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 98236155 98236214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 98252463 98252634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 98254019 98254087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 98294003 98294137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1107 nt):
ATGGCAGCGGTGGCGCCCGCGGGCCCCGGGGACTCCGCCTCGGCCGCCCTGGACGAGCTGTCACTGAATT
TCACGTACGGGGCACCAGGCGCCGGCAACGGCTCCCTCTCGGGCGACTGGTACCGCAGGAACCAGATTCA
CCTTTTTGGAGTTTTGCTGGCTATTTTAGGAAACTTGGTGATCAGTATTTCTCTAAATATTCAGAAATAT
TCTCACCTTCAGCTGGCACAACAAGAGCACCCAAGGCCATACTTCAAGAGTGTGCTGTGGTGGGGTGGTG
TCCTGCTGATGGCCGTGGGAGAGACGGGGAACTTTGCAGCCTATGGATTTGCTCCCATTACTCTGATCGC
TCCGTTAGGCTGTGTGTCTGTTACAGGTAGTGCCATTATTTCTGTTACATTTCTGAAAGACAATTTGAGA
GCCTCAGACTTACTCGGTACGACACTGGCATTTGCAGGAACATATTTACTGGTGAACTTTGCTCCAAATA
TAACTCAGGCAATCTCAGCAAGAACAGTACAGTATTACCTTGTCGGATGGCAGTTCCTGATCTATGTGAT
TTTAGAAATATTAATTTTCTGCATTCTCCTGTATTTCTATAAAAGAAAAGGAATGAAGCATATGGTGATT
CTGCTAACCCTGGTGGCAATTCTAGCCTCATTGACTGTTATTTCAGTAAAGGCCGTCTCAGGCATGATCA
CTTTTTCTGTGATGGATAAAATGCAACTAACTTACCCCATTTTCTATATCATGTTTATCATCATGATAGC
ATCTTGTGTTTTCCAAGTCAAGTTCCTGAATCAAGCCACGAAACTCTACAATACGACAACAGTGGTGCCA
GTTAATCATATTTTCTTTACAATCAGTGCCATCATTGCAGGTATCATATTTTATCAGGAATTCCTTGGTG
CTCCTTTTCTCACTGTATTTATATATCTTTTTGGGTGTTTTCTGTCATTCCTTGGTGTATTTTTGGTCAC
AAGAAATCGAGAAAAGGAACATCTGCAACAGTCTTATATTGATTTTGGAAATATTCCTGACACAACCCCA
GAGAGAAAGGCTTGGAGGGAAACAAATGTTGGACAAAATACAACCAGATTCACATAG

Translation (368 aa):
MAAVAPAGPGDSASAALDELSLNFTYGAPGAGNGSLSGDWYRRNQIHLFGVLLAILGNLVISISLNIQKY
SHLQLAQQEHPRPYFKSVLWWGGVLLMAVGETGNFAAYGFAPITLIAPLGCVSVTGSAIISVTFLKDNLR
ASDLLGTTLAFAGTYLLVNFAPNITQAISARTVQYYLVGWQFLIYVILEILIFCILLYFYKRKGMKHMVI
LLTLVAILASLTVISVKAVSGMITFSVMDKMQLTYPIFYIMFIIMIASCVFQVKFLNQATKLYNTTTVVP
VNHIFFTISAIIAGIIFYQEFLGAPFLTVFIYLFGCFLSFLGVFLVTRNREKEHLQQSYIDFGNIPDTTP
ERKAWRETNVGQNTTRFT


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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