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Report for CCDS5327.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5327.1 Public Homo sapiens 7 PSMG3 24 110 108 CCDS HistoryNCBI Gene:84262Re-query CCDS DB by CCDS ID:5327.1Re-query CCDS DB by GeneID:84262See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5327.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000252329.3 ENSP00000252329.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000252329.3Link to Ensembl Protein Viewer:ENSP00000252329.3Re-query CCDS DB by Nucleotide ID:ENST00000252329Re-query CCDS DB by Protein ID:ENSP00000252329
Original member Current member EBI ENST00000288607.3 ENSP00000288607.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000288607.3Link to Ensembl Protein Viewer:ENSP00000288607.2Re-query CCDS DB by Nucleotide ID:ENST00000288607Re-query CCDS DB by Protein ID:ENSP00000288607
Original member Current member EBI ENST00000404674.7 ENSP00000384799.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000404674.7Link to Ensembl Protein Viewer:ENSP00000384799.3Re-query CCDS DB by Nucleotide ID:ENST00000404674Re-query CCDS DB by Protein ID:ENSP00000384799
Original member Current member NCBI NM_001134340.2 NP_001127812.1 Accepted alive Link to Nucleotide Sequence:NM_001134340.2Link to Protein Sequence:NP_001127812.1Re-query CCDS DB by Nucleotide ID:NM_001134340Re-query CCDS DB by Protein ID:NP_001127812Link to BLAST:NP_001127812.1
Original member Current member NCBI NM_032302.4 NP_115678.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032302.4Link to Protein Sequence:NP_115678.1Re-query CCDS DB by Nucleotide ID:NM_032302Re-query CCDS DB by Protein ID:NP_115678Link to BLAST:NP_115678.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001127812.1 122 Q9BT73 122 100% 0 0
NP_115678.1 122 Q9BT73 122 100% 0 0

Chromosomal Locations for CCDS 5327.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 1567698 1567850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 1569124 1569339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (369 nt):
ATGGAAGACACGCCGTTGGTGATATCGAAGCAGAAGACGGAGGTGGTGTGCGGGGTCCCCACCCAGGTGG
TGTGTACGGCCTTCAGCAGTCACATCCTGGTGGTGGTGACCCAGTTTGGGAAGATGGGCACCCTGGTCTC
CCTGGAGCCCAGCAGCGTGGCCAGTGACGTCAGCAAGCCTGTGCTCACCACAAAAGTCCTTCTGGGGCAG
GATGAGCCTCTCATCCATGTCTTTGCAAAGAACCTGGTAGCGTTTGTGTCTCAAGAAGCTGGAAACAGAG
CAGTCCTCCTCGCCGTGGCCGTGAAGGACAAAAGCATGGAGGGGCTGAAGGCGCTGAGGGAGGTGATCCG
GGTGTGCCAGGTGTGGTGA

Translation (122 aa):
MEDTPLVISKQKTEVVCGVPTQVVCTAFSSHILVVVTQFGKMGTLVSLEPSSVASDVSKPVLTTKVLLGQ
DEPLIHVFAKNLVAFVSQEAGNRAVLLAVAVKDKSMEGLKALREVIRVCQVW


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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