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Report for CCDS3793.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3793.1 Public Homo sapiens 4 ASIC5 24 110 108 CCDS HistoryNCBI Gene:51802Re-query CCDS DB by CCDS ID:3793.1Re-query CCDS DB by GeneID:51802See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3793.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000537611.3 ENSP00000442477.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000537611.3Link to Ensembl Protein Viewer:ENSP00000442477.2Re-query CCDS DB by Nucleotide ID:ENST00000537611Re-query CCDS DB by Protein ID:ENSP00000442477
Original member Current member NCBI NM_017419.3 NP_059115.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017419.3Link to Protein Sequence:NP_059115.1Re-query CCDS DB by Nucleotide ID:NM_017419Re-query CCDS DB by Protein ID:NP_059115Link to BLAST:NP_059115.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_059115.1 505 Q9NY37 505 100% 0 0

Chromosomal Locations for CCDS 3793.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 155829856 155830046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155831824 155831915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155836689 155836857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155838813 155838869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155842207 155842354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155843681 155843830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155852191 155852316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155854077 155854314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155863448 155863754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155866187 155866226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1518 nt):
ATGGAGCAGACAGAAAAATCAAAAGTATATGCTGAGAACGGACTCTTAGAAAAGATAAAGCTTTGCCTTT
CAAAGAAACCACTGCCATCTCCCACTGAGCGAAAGAAGTTTGACCATGACTTTGCCATCTCCACTTCCTT
TCATGGGATACACAATATTGTTCAGAACCGGAGCAAAATTCGCAGGGTGCTCTGGTTGGTGGTGGTTCTG
GGCTCAGTCTCACTTGTGACATGGCAGATCTACATTCGCTTGCTCAACTACTTCACATGGCCAACCACAA
CGTCCATTGAGGTTCAATATGTGGAAAAGATGGAGTTCCCAGCTGTGACATTTTGTAATTTGAACAGGTT
CCAAACAGATGCTGTAGCCAAATTTGGTGTTATTTTTTTCTTATGGCACATTGTATCCAAAGTCCTCCAT
CTTCAAGAAATTACTGCCAATTCCACTGGCTCTAGAGAGGCTACTGATTTTGCTGCAAGTCACCAAAACT
TCAGCATTGTGGAATTTATCAGGAACAAAGGTTTTTATCTCAACAATAGCACTTTGTTGGACTGTGAGTT
TTTTGGAAAGCCATGTAGCCCAAAGGATTTTGCACATGTCTTCACTGAATATGGAAATTGTTTTACTTTT
AATCATGGTGAAACTCTCCAAGCAAAGAGAAAAGTGAGTGTCTCTGGAAGAGGTTTGAGCTTACTCTTCA
ATGTGAATCAGGAGGCATTCACTGATAACCCAGCCCTTGGTTTCGTTGATGCTGGGATCATCTTTGTTAT
CCATTCACCAAAGAAGGTGCCACAGTTTGATGGGTTAGGCTTGTTGTCACCTGTGGGAATGCACGCAAGG
GTAACCATCCGCCAAGTGAAGACAGTTCATCAAGAATACCCTTGGGGAGAATGCAATCCTAACATCAAGC
TGCAGAATTTTAGCAGCTACAGCACTTCTGGTTGCTTGAAGGAATGCAAAGCCCAGCACATAAAAAAGCA
ATGTGGATGTGTGCCTTTTCTTCTTCCTGGATATGGGATAGAATGTGACCTACAAAAGTACTTCAGCTGT
GTTTCTCCTGTACTTGACCACATTGAATTTAAGGATTTATGTACAGTAGGAACACATAACTCTAGCTGCC
CCGTTTCTTGTGAAGAAATAGAATACCCGGCCACTATTTCTTATTCCTCTTTTCCAAGTCAAAAAGCTTT
GAAATATCTTTCCAAGAAGTTGAATCAAAGCCGGAAATACATCAGGGAGAATCTTGTAAAAATTGAAATT
AACTATAGTGACCTAAACTATAAGATAACCCAGCAGCAAAAGGCGGTGAGTGTGTCTGAGTTACTTGCAG
ATCTTGGTGGTCAGCTGGGTCTATTTTGTGGGGCCAGTCTGATCACGATCATAGAAATTATTGAATATCT
ATTCACCAATTTCTACTGGATATGCATTTTCTTTTTGCTGAAGATATCTGAAATGACCCAGTGGACTCCT
CCACCTCAGAATCATCTGGGAAATAAAAATAGGATAGAGGAGTGTTAA

Translation (505 aa):
MEQTEKSKVYAENGLLEKIKLCLSKKPLPSPTERKKFDHDFAISTSFHGIHNIVQNRSKIRRVLWLVVVL
GSVSLVTWQIYIRLLNYFTWPTTTSIEVQYVEKMEFPAVTFCNLNRFQTDAVAKFGVIFFLWHIVSKVLH
LQEITANSTGSREATDFAASHQNFSIVEFIRNKGFYLNNSTLLDCEFFGKPCSPKDFAHVFTEYGNCFTF
NHGETLQAKRKVSVSGRGLSLLFNVNQEAFTDNPALGFVDAGIIFVIHSPKKVPQFDGLGLLSPVGMHAR
VTIRQVKTVHQEYPWGECNPNIKLQNFSSYSTSGCLKECKAQHIKKQCGCVPFLLPGYGIECDLQKYFSC
VSPVLDHIEFKDLCTVGTHNSSCPVSCEEIEYPATISYSSFPSQKALKYLSKKLNQSRKYIRENLVKIEI
NYSDLNYKITQQQKAVSVSELLADLGGQLGLFCGASLITIIEIIEYLFTNFYWICIFFLLKISEMTQWTP
PPQNHLGNKNRIEEC


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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