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Report for CCDS12062.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12062.2 Public Homo sapiens 19 PWWP3A 24 110 108 CCDS HistoryNCBI Gene:84939Re-query CCDS DB by CCDS ID:12062.2Re-query CCDS DB by GeneID:84939See the combined annotation on chromosome 19 in Sequence Viewer

Public Note for CCDS 12062.1
The coding region has been updated to shorten the N-terminus to one that is more supported by conservation.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 12062.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000591806.6 ENSP00000467083.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000591806.6Link to Ensembl Protein Viewer:ENSP00000467083.2Re-query CCDS DB by Nucleotide ID:ENST00000591806Re-query CCDS DB by Protein ID:ENSP00000467083
Original member Current member EBI ENST00000591337.7 ENSP00000467287.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000591337.7Link to Ensembl Protein Viewer:ENSP00000467287.4Re-query CCDS DB by Nucleotide ID:ENST00000591337Re-query CCDS DB by Protein ID:ENSP00000467287
Original member Current member NCBI NM_001369789.1 NP_001356718.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001369789.1Link to Protein Sequence:NP_001356718.1Re-query CCDS DB by Nucleotide ID:NM_001369789Re-query CCDS DB by Protein ID:NP_001356718Link to BLAST:NP_001356718.1
Original member Current member NCBI NM_032853.5 NP_116242.3 Accepted alive Link to Nucleotide Sequence:NM_032853.5Link to Protein Sequence:NP_116242.3Re-query CCDS DB by Nucleotide ID:NM_032853Re-query CCDS DB by Protein ID:NP_116242Link to BLAST:NP_116242.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001356718.1 710 Q2TAK8-1 710 100% 0 0
NP_116242.3 710 Q2TAK8-1 710 100% 0 0

Chromosomal Locations for CCDS 12062.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 1356393 1356449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1357009 1357094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1358394 1358464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1360136 1361032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1362250 1362351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1364509 1364579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1366305 1366381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1367160 1367220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1369265 1369340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1369596 1369646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1370642 1371078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1373072 1373160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1376519 1376576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2133 nt):
ATGGCGGATGCCAAGTATGTCCTCTGCCGATGGGAAAAGCGATTATGGCCTGCGAAGGTTTTGGCCCGAA
CCGCGACTTCAACAAAAAATAAGAGAAGAAAGGAATATTTTCTAGCTGTGCAAATCCTCTCTCTAGAGGA
AAAAATTAAGGTGAAAAGCACTGAAGTTGAGATCCTAGAGAAGTCTCAAATTGAAGCCATTGCTTCCTCG
TTAGCCTCACAGAATGAGGTTCCTGCGGCACCCCTGGAAGAACTGGCCTACAGACGGTCGCTTCGCGTGG
CTCTGGACGTTCTGAGCGAGGGCTCGATTTGGAGTCAAGAAAGCTCTGCAGGGACAGGTAGAGCTGACCG
GTCTCTGCGAGGGAAGCCCATGGAGCATGTCTCCTCGCCCTGTGATTCGAACTCCTCATCTCTTCCCCGC
GGAGACGTGTTGGGCAGTTCCAGACCTCACAGGAGGAGGCCATGTGTGCAACAAAGCCTGTCAAGTTCGT
TCACTTGTGAAAAGGACCCCGAGTGCAAAGTGGACCACAAGAAGGGGCTCAGGAAAAGTGAAAACCCAAG
AGGCCCGTTGGTCCTCCCAGCTGGAGGTGGTGCCCAAGATGAGAGTGGGTCCAGAATCCACCACAAAAAT
TGGACTCTTGCAAGTAAGAGGGGAGGAAACTCAGCGCAGAAGGCTAGCTTGTGCCTGAATGGATCTTCCC
TTTCAGAGGACGACACGGAGAGAGACATGGGGAGCAAAGGAGGCAGCTGGGCAGCCCCGTCCTTGCCCTC
CGGGGTCAGGGAGGACGATCCCTGTGCCAACGCTGAGGGACACGACCCCGGTCTGCCGTTGGGCAGCCTC
ACTGCGCCCCCAGCCCCTGAGCCCTCGGCCTGCTCAGAGCCTGGAGAATGCCCTGCGAAAAAGAGGCCGC
GCCTGGATGGCAGCCAAAGGCCGCCTGCCGTGCAGCTGGAGCCCATGGCAGCAGGGGCCGCACCATCCCC
CGGGCCGGGGCCAGGGCCCAGAGAGTCTGTGACCCCGCGCAGCACCGCCAGGCTGGGCCCGCCTCCCTCC
CACGCCTCTGCGGATGCAACCAGATGTCTTCCTTGCCCGGATTCCCAGAAGCTGGAGAAAGAGTGCCAGT
CTTCCGAAGAGTCCATGGGGTCTAATTCCATGCGTTCTATCCTGGAGGAAGACGAGGAAGACGAGGAGCC
ACCAAGAGTCCTTTTATACCACGAACCACGTTCGTTTGAAGTAGGAATGCTAGTCTGGCATAAACATAAA
AAATACCCCTTCTGGCCAGCAGTGGTCAAAAGCGTCAGGCAGAGAGATAAGAAAGCAAGTGTGCTATACA
TCGAAGGACACATGAACCCGAAAATGAAAGGTTTCACAGTGTCTCTTAAAAGTTTAAAGCACTTTGATTG
TAAAGAGAAACAGACGCTTCTGAATCAAGCCAGGGAGGACTTCAACCAGGACATCGGCTGGTGTGTCTCC
CTCATCACCGACTACAGGGTCCGGTTAGGCTGCGGGTCTTTTGCTGGCTCTTTCCTGGAATATTACGCGG
CTGATATAAGCTATCCTGTCCGAAAATCCATCCAGCAGGACGTCTTGGGGACCAAGCTTCCTCAACTGAG
CAAGGGGAGCCCCGAGGAGCCCGTGGTGGGGTGCCCCCTGGGGCAGAGGCAGCCCTGCCGGAAAATGCTC
CCCGACCGCTCGCGGGCCGCCCGGGACCGGGCCAACCAGAAGCTGGTGGAGTACATTGTGAAGGCCAAGG
GCGCGGAGAGCCACCTGCGGGCCATCCTAAAGAGCAGGAAGCCATCTCGCTGGCTGCAGACCTTCCTGAG
CTCCAGCCAGTACGTGACCTGTGTGGAGACCTACCTGGAGGATGAGGGGCAGCTGGACCTGGTGGTGAAG
TACCTGCAGGGCGTCTACCAGGAGGTGGGGGCCAAGGTGCTCCAGCGCACCAACGGCGACCGGATCCGGT
TCATTCTGGACGTGCTTCTGCCCGAGGCCATCATCTGTGCGATCTCTGCGGTGGACGAGGTGGACTACAA
GACGGCTGAGGAGAAGTACATCAAGGGGCCTTCGCTGAGCTACCGGGAAAAAGAAATATTTGACAACCAG
CTCCTTGAAGAGCGGAACCGGCGCCGTCGGTGA

Translation (710 aa):
MADAKYVLCRWEKRLWPAKVLARTATSTKNKRRKEYFLAVQILSLEEKIKVKSTEVEILEKSQIEAIASS
LASQNEVPAAPLEELAYRRSLRVALDVLSEGSIWSQESSAGTGRADRSLRGKPMEHVSSPCDSNSSSLPR
GDVLGSSRPHRRRPCVQQSLSSSFTCEKDPECKVDHKKGLRKSENPRGPLVLPAGGGAQDESGSRIHHKN
WTLASKRGGNSAQKASLCLNGSSLSEDDTERDMGSKGGSWAAPSLPSGVREDDPCANAEGHDPGLPLGSL
TAPPAPEPSACSEPGECPAKKRPRLDGSQRPPAVQLEPMAAGAAPSPGPGPGPRESVTPRSTARLGPPPS
HASADATRCLPCPDSQKLEKECQSSEESMGSNSMRSILEEDEEDEEPPRVLLYHEPRSFEVGMLVWHKHK
KYPFWPAVVKSVRQRDKKASVLYIEGHMNPKMKGFTVSLKSLKHFDCKEKQTLLNQAREDFNQDIGWCVS
LITDYRVRLGCGSFAGSFLEYYAADISYPVRKSIQQDVLGTKLPQLSKGSPEEPVVGCPLGQRQPCRKML
PDRSRAARDRANQKLVEYIVKAKGAESHLRAILKSRKPSRWLQTFLSSSQYVTCVETYLEDEGQLDLVVK
YLQGVYQEVGAKVLQRTNGDRIRFILDVLLPEAIICAISAVDEVDYKTAEEKYIKGPSLSYREKEIFDNQ
LLEERNRRRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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