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Report for CCDS4433.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4433.1 Public Homo sapiens 5 GMCL2 24 110 108 CCDS HistoryNCBI Gene:64396Re-query CCDS DB by CCDS ID:4433.1Re-query CCDS DB by GeneID:64396See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 4433.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000463439.3 ENSP00000497178.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000463439.3Link to Ensembl Protein Viewer:ENSP00000497178.1Re-query CCDS DB by Nucleotide ID:ENST00000463439Re-query CCDS DB by Protein ID:ENSP00000497178
Original member Current member NCBI NM_001358008.2 NP_001344937.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001358008.2Link to Protein Sequence:NP_001344937.1Re-query CCDS DB by Nucleotide ID:NM_001358008Re-query CCDS DB by Protein ID:NP_001344937Link to BLAST:NP_001344937.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344937.1 526 Q8NEA9 526 100% 0 0

Chromosomal Locations for CCDS 4433.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 178185719 178187299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1581 nt):
ATGGGATCGTCGAGCAGCCGGGTGCTGGGCCAGCCGAGGCGAGCCCTTGCCCAGCAGGAACAGGGTGCCA
GGGCCAGGGGCTCGGCCCGGAGGCCGGACACTGGAGACGATGCGGCGAGCTACGGCTTCTGTTACTGCCC
GGGCAGTCACAAGCGCAAGCGGAGCAGCGGGGCCTGCCGCTACTGTGACCCGGACTCGCACAGGGAGGAG
CATGAGGAGGAGGGGGACAAGCAGCAGCCGCTCCTCAACACCCCTGCAAGGAAAAAATTAAGGAGTACAT
CCAAATATATTTATCAAACATTATTTTTGAATGGTGAAAACAGTGACATTAAGATTTGTGCTCTAGGAGA
AGAATGGCGATTACACAAAATATATTTATGTCAATCTGGCTACTTTTCTAGTATGTTCAGTGGTTCTTGG
AAAGAATCCAGCATGAATATTATTGAACTGGAGATTCCTGACCAGAACATTGATGTAGACGCACTGCAGG
TTGCGTTTGGTTCACTGTATCGAGATGATGTCTTGATAAAACCCAGTCGAGTTGTTGCCATTTTGGCAGC
AGCTTGTATGCTGCAGCTGGATGGTTTAATACAGCAGTGTGGTGAGACAATGAAGGAAACAATTAATGTG
AAAACTGTATGCGGTTATTACACATCAGTAGAGATCTATGGATTAGATTCTGTAAAGAAAAAGTGCCTTG
AATGGCTTCTAAACAATTTGATGACTCACCAGAATGTTAAACTTTTTAAAGAACTCGGTATAAATGTCAT
GAAACAGCTCATTGGTTCCTCTAACTTATTTGTGATGCAAGTGGAGATGGATGTATACACCACTCTAAAA
AAGTGGATGTTCCTTCAACTTGTGCCTTCTTGGAATGGATCTTTAAAACAGCTTTTGACAGAAACAGATG
TCTGGTTTTCTAAACAGAGAAAAGATTTTGAAGGTATGGCCTTTCTTGAAACTGAACCAGGAAAACCATT
TGTGTCAGTATTCAGACATTTAAGGTTACAATATATTATCAGTGACCTAGCTTCTGCAAGAATTATTGAA
CAAGATGGTATAGTACCTTCAGAATGGCTGTCTTCTGTGTATAAACAGCAGTGGTTTGCTATGCTGCGGG
CAGAACAAGACCGTGAGGTAGGGCCTCAAGAAATCAATAAAGAAGACCTAGAGGGAAATAGCATGAGGTG
TGGTAGAAAGCTTGCCAAAGATGGTGAATACTACTGGTGTTGGACGGGTTTTAACTTCGGCTTTGACCTA
CTTGTAATTTACACCAATGGATACATCATTTTCAAACGCAATACACTGAATCAGCCACGCAGCGGGTCTG
TCAGTTTACGGCCTCGAAGGAGCATAGCATTTAGATTACGCTTGGCTTCTTTTGATAGTAGTGGAAAACT
AGTATGTAGTAGAACAACTGGCTATCAAATACTTATACTTAAAAAGGATCAGGAACAAGTGGTGATGAAC
TTGGACAGCAGGTTTCTGACCTTCCCTTTATATATCTGCTGTAACTTCTTGTATATATCACCAGAAAAAG
GAATTGAAAATAATCGTCACCCAGAAAATCCAGAAAACTGA

Translation (526 aa):
MGSSSSRVLGQPRRALAQQEQGARARGSARRPDTGDDAASYGFCYCPGSHKRKRSSGACRYCDPDSHREE
HEEEGDKQQPLLNTPARKKLRSTSKYIYQTLFLNGENSDIKICALGEEWRLHKIYLCQSGYFSSMFSGSW
KESSMNIIELEIPDQNIDVDALQVAFGSLYRDDVLIKPSRVVAILAAACMLQLDGLIQQCGETMKETINV
KTVCGYYTSVEIYGLDSVKKKCLEWLLNNLMTHQNVKLFKELGINVMKQLIGSSNLFVMQVEMDVYTTLK
KWMFLQLVPSWNGSLKQLLTETDVWFSKQRKDFEGMAFLETEPGKPFVSVFRHLRLQYIISDLASARIIE
QDGIVPSEWLSSVYKQQWFAMLRAEQDREVGPQEINKEDLEGNSMRCGRKLAKDGEYYWCWTGFNFGFDL
LVIYTNGYIIFKRNTLNQPRSGSVSLRPRRSIAFRLRLASFDSSGKLVCSRTTGYQILILKKDQEQVVMN
LDSRFLTFPLYICCNFLYISPEKGIENNRHPENPEN


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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