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Report for CCDS12698.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12698.1 Public Homo sapiens 19 CCDC9 24 110 108 CCDS HistoryNCBI Gene:26093Re-query CCDS DB by CCDS ID:12698.1Re-query CCDS DB by GeneID:26093See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12698.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000221922.11 ENSP00000221922.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000221922.11Link to Ensembl Protein Viewer:ENSP00000221922.5Re-query CCDS DB by Nucleotide ID:ENST00000221922Re-query CCDS DB by Protein ID:ENSP00000221922
Original member Current member NCBI NM_015603.3 NP_056418.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015603.3Link to Protein Sequence:NP_056418.1Re-query CCDS DB by Nucleotide ID:NM_015603Re-query CCDS DB by Protein ID:NP_056418Link to BLAST:NP_056418.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056418.1 531 Q9Y3X0 531 100% 0 0

Chromosomal Locations for CCDS 12698.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 47258401 47258403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47258559 47258663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47260321 47260422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47260588 47260839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47264603 47264686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47264773 47264946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47266611 47266792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47270407 47270453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47270553 47270688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47271082 47271187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47271274 47271678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1596 nt):
ATGGCAGCCACACTCGATTTGAAATCAAAGGAGGAGAAGGATGCTGAGTTGGACAAGAGGATCGAGGCTC
TTCGGCGGAAGAATGAGGCCCTCATCCGGCGCTACCAGGAGATTGAGGAAGACCGTAAGAAAGCTGAACT
TGAGGGAGTCGCAGTCACAGCTCCCCGAAAGGGCCGCTCAGTGGAGAAGGAGAACGTGGCAGTGGAGTCG
GAGAAGAACCTGGGTCCTTCCCGGAGGTCTCCTGGGACCCCTCGGCCCCCAGGGGCCAGCAAGGGGGGCC
GGACTCCTCCACAGCAGGGAGGCCGGGCCGGCATGGGCCGAGCATCGCGCAGCTGGGAGGGCAGCCCCGG
GGAGCAGCCTCGAGGAGGAGGAGCTGGGGGCCGTGGCCGGAGGGGCCGGGGCCGAGGTTCACCTCACCTC
TCTGGAGCTGGAGACACCTCAATCTCTGACCGTAAATCCAAGGAGTGGGAGGAGCGGCGCAGGCAGAACA
TTGAGAAGATGAATGAGGAGATGGAGAAGATCGCCGAGTATGAGCGCAACCAGCGGGAAGGGGTTCTTGA
ACCCAACCCAGTGCGGAACTTCCTGGACGACCCCCGGCGACGCAGCGGGCCCCTGGAGGAGTCTGAGCGG
GACCGCCGGGAGGAGAGCCGCCGGCACGGCCGCAACTGGGGGGGCCCCGACTTCGAGCGGGTGCGCTGTG
GCCTTGAGCACGAGCGGCAGGGCCGCCGAGCTGGCCTGGGCAGTGCTGGAGACATGACGTTGTCCATGAC
GGGCCGGGAGCGGTCGGAGTACCTGCGCTGGAAGCAGGAGAGGGAGAAGATCGACCAGGAGCGGCTGCAG
AGGCACCGCAAGCCCACTGGCCAGTGGAGGCGCGAGTGGGATGCCGAGAAGACCGATGGGATGTTCAAGG
ATGGCCCAGTCCCTGCCCATGAACCATCCCACCGCTATGATGACCAGGCCTGGGCCCGGCCCCCGAAGCC
CCCTACTTTTGGGGAGTTCCTGTCCCAGCACAAAGCTGAGGCCAGCAGCCGCAGAAGGAGAAAGAGCAGT
CGGCCCCAGGCCAAGGCAGCGCCCAGGGCCTACAGTGACCATGATGACCGCTGGGAGACAAAAGAAGGGG
CAGCATCCCCAGCCCCTGAGACTCCACAGCCTACTTCCCCCGAGACTTCCCCCAAGGAGACACCCATGCA
GCCACCCGAGATCCCAGCTCCTGCCCACCGGCCTCCTGAAGACGAGGGGGAAGAGAATGAGGGGGAAGAG
GATGAAGAATGGGAGGACATAAGTGAGGATGAGGAAGAGGAGGAGATCGAGGTGGAAGAAGGTGATGAGG
AGGAACCAGCCCAAGACCACCAAGCCCCAGAGGCTGCCCCCACCGGGATCCCCTGCAGTGAGCAGGCCCA
CGGAGTCCCCTTCAGTCCGGAGGAGCCCCTGCTGGAGCCCCAGGCCCCTGGCACGCCTTCCAGCCCTTTC
TCACCACCCAGCGGCCACCAGCCTGTGTCCGATTGGGGTGAAGAGGTGGAGCTGAATTCTCCCCGGACCA
CTCACCTGGCTGGCGCCCTCTCCCCGGGTGAGGCCTGGCCTTTTGAGAGTGTATGA

Translation (531 aa):
MAATLDLKSKEEKDAELDKRIEALRRKNEALIRRYQEIEEDRKKAELEGVAVTAPRKGRSVEKENVAVES
EKNLGPSRRSPGTPRPPGASKGGRTPPQQGGRAGMGRASRSWEGSPGEQPRGGGAGGRGRRGRGRGSPHL
SGAGDTSISDRKSKEWEERRRQNIEKMNEEMEKIAEYERNQREGVLEPNPVRNFLDDPRRRSGPLEESER
DRREESRRHGRNWGGPDFERVRCGLEHERQGRRAGLGSAGDMTLSMTGRERSEYLRWKQEREKIDQERLQ
RHRKPTGQWRREWDAEKTDGMFKDGPVPAHEPSHRYDDQAWARPPKPPTFGEFLSQHKAEASSRRRRKSS
RPQAKAAPRAYSDHDDRWETKEGAASPAPETPQPTSPETSPKETPMQPPEIPAPAHRPPEDEGEENEGEE
DEEWEDISEDEEEEEIEVEEGDEEEPAQDHQAPEAAPTGIPCSEQAHGVPFSPEEPLLEPQAPGTPSSPF
SPPSGHQPVSDWGEEVELNSPRTTHLAGALSPGEAWPFESV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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