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Report for CCDS42701.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42701.1 Public Homo sapiens 2 TTC31 24 110 108 CCDS HistoryNCBI Gene:64427Re-query CCDS DB by CCDS ID:42701.1Re-query CCDS DB by GeneID:64427See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42701.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000233623.11 ENSP00000233623.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000233623.11Link to Ensembl Protein Viewer:ENSP00000233623.6Re-query CCDS DB by Nucleotide ID:ENST00000233623Re-query CCDS DB by Protein ID:ENSP00000233623
Original member Current member NCBI NM_022492.6 NP_071937.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022492.6Link to Protein Sequence:NP_071937.4Re-query CCDS DB by Nucleotide ID:NM_022492Re-query CCDS DB by Protein ID:NP_071937Link to BLAST:NP_071937.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071937.4 519 Q49AM3-1 519 100% 0 0

Chromosomal Locations for CCDS 42701.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 74483096 74483135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74483322 74483410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74490025 74490127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74490244 74490473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74490656 74490739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74491128 74491184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74491295 74491375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74491481 74491672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74492004 74492055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74492139 74492229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74492304 74492445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74492646 74492747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74492922 74493218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1560 nt):
ATGGCGCCGATTCCAAAGACTGTGGGGCGGATCAAGCTAGACTGCTCTCTACGGCCCAGCTGCCCACTGG
AGGTCGCTGCTGCACCCAAACTTTGCAAGGAATTCGGTCCAGAGGATTACGGCGAAGAGGACATAGTGGA
TTTTCTTCGACGGCTTGTGGAGAGTGATCCCCAGGGCCTGCACCGGATCCATGTGGATGGGAGCAGCGGG
CGGCTGCAGCTGTGGCACCATGATTACCTCCTGGGCCACTTGGATGATGAAGGGAAATCAACTGGACAGA
GTGACAGGGGCAAGGGGGCTGAGGGACTGGGCACCTACTGTGGTCTCCGCAAGTCCTTCCTGTATCCTCC
CCAAGAGTCTGAGCCCTGCCCTCAAAGCCCCTCTGCCTCTGCCACCTTCCCCAGTGTCTCAGACAGCCTG
CTTCAGGTGGCCATGCCCCAGAAGCTCCTGGTGACAGAAGAGGAAGCCAATCGCCTGGCTGAGGAGCTGG
TGGCTGAGGAGGAGCGCATGAAACAGAAAGCAGAGAAAAAGCGACTCAAGAAGAAGCGTCAAAAGGAACG
GAAGCGACAGGAGCGTTTGGAGCAGTACTGTGGGGAGCCCAAGGCCAGCACTACCTCAGATGGAGATGAG
AGCCCCCCATCCAGCCCTGGAAACCCAGTTCAGGGACAGTGTGGTGAAGAAGAGGACTCACTGGATCTAT
CTAGCACTTTTGTGTCTCTGGCTTTGCGCAAGGTTGGGGATTGGCCCCTCAGTGCCCGCAGAGAGAAGGG
ACTGAACCAGGAGCCCCAAGGCAGGGGTCTGGCCCTCCAGAAGATGGGTCAAGAGGAAGAGAGCCCTCCA
AGAGAGGAGAGGCCCCAGCAGAGTCCAAAGGTACAGGCATCTCCGGGACTGCTGGCAGCTGCCTTACAAC
AGAGCCAGGAACTGGCAAAGTTGGGTACCAGCTTTGCTCAAAATGGTTTCTACCATGAGGCCGTGGTCCT
CTTCACCCAGGCCTTGAAGCTCAACCCCCAGGACCACCGGTTATTTGGAAATCGTTCCTTCTGCCATGAG
CGGTTGGGTCAGCCAGCGTGGGCCCTGGCTGATGCCCAGGTGGCCCTTACCCTACGGCCTGGCTGGCCCC
GGGGCCTCTTCCGCCTGGGCAAGGCCTTGATGGGACTACAGCGCTTCAGAGAGGCAGCTGCTGTGTTTCA
GGAAACTCTGAGAGGTGGGTCCCAGCCTGACGCAGCCCGAGAGCTCCGCTCTTGCCTTCTCCACCTCACA
CTGCAGGGTCAGCGAGGAGGAATCTGTGCACCACCTCTGTCACCTGGGGCCCTCCAGCCACTTCCCCATG
CTGAGCTGGCACCCTCAGGCCTACCTTCCCTCAGGTGCCCTCGAAGCACTGCTTTGAGGTCCCCTGGCCT
GTCTCCACTCTTGCATTATCCTTCATGTCACCGAAGCCACCCCAACCAGCCCCTCTCCCAGACTCAGAGT
AGAAGGCCCCATCCTCTCAAGCCCCAGGACCCTTCAAAGGGCTGGGACATCCTGGGACTTGGGCTCCAGC
ATCTGTCTCAGGCCAGATGA

Translation (519 aa):
MAPIPKTVGRIKLDCSLRPSCPLEVAAAPKLCKEFGPEDYGEEDIVDFLRRLVESDPQGLHRIHVDGSSG
RLQLWHHDYLLGHLDDEGKSTGQSDRGKGAEGLGTYCGLRKSFLYPPQESEPCPQSPSASATFPSVSDSL
LQVAMPQKLLVTEEEANRLAEELVAEEERMKQKAEKKRLKKKRQKERKRQERLEQYCGEPKASTTSDGDE
SPPSSPGNPVQGQCGEEEDSLDLSSTFVSLALRKVGDWPLSARREKGLNQEPQGRGLALQKMGQEEESPP
REERPQQSPKVQASPGLLAAALQQSQELAKLGTSFAQNGFYHEAVVLFTQALKLNPQDHRLFGNRSFCHE
RLGQPAWALADAQVALTLRPGWPRGLFRLGKALMGLQRFREAAAVFQETLRGGSQPDAARELRSCLLHLT
LQGQRGGICAPPLSPGALQPLPHAELAPSGLPSLRCPRSTALRSPGLSPLLHYPSCHRSHPNQPLSQTQS
RRPHPLKPQDPSKGWDILGLGLQHLSQAR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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