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Report for CCDS14673.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14673.1 Public Homo sapiens X SPANXC 24 110 108 CCDS HistoryNCBI Gene:64663Re-query CCDS DB by CCDS ID:14673.1Re-query CCDS DB by GeneID:64663See the combined annotation on chromosome X in Sequence Viewer

Public Note for CCDS 14673.1
The coding region has been updated to represent the sequence of the GRCh38 reference genome assembly, which results in eight non-synonymous substitutions in the coding region.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 14673.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000358993.3 ENSP00000351884.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000358993.3Link to Ensembl Protein Viewer:ENSP00000351884.2Re-query CCDS DB by Nucleotide ID:ENST00000358993Re-query CCDS DB by Protein ID:ENSP00000351884
Original member Current member NCBI NM_022661.4 NP_073152.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022661.4Link to Protein Sequence:NP_073152.2Re-query CCDS DB by Nucleotide ID:NM_022661Re-query CCDS DB by Protein ID:NP_073152Link to BLAST:NP_073152.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_073152.2 97 Q9NY87 97 100% 0 0

Chromosomal Locations for CCDS 14673.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 141241517 141241738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 141242386 141242457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (294 nt):
ATGGACAAACAATCCAGTGCCGGCGGGGTGAAGAGGAGCGTCCCCTGTGATTCCAACGAGGCCAACGAGA
TGATGCCGGAGACCTCGAGTGGGTACTCAGACCCGCAACCTGCTCCGAAAAAACTAAAAACATCTGAGTC
CTCGACCATACTAGTGGTTCGCTACAGGAGGAACGTGAAAAGAACATCTCCAGAGGAACTGGTGAATGAC
CACGCCCGAGAGAACAGAATCAACCCCCTCCAAATGGAGGAGGAGGAATTCATGGAAATAATGGTTGAAA
TACCTGCAAAGTAG

Translation (97 aa):
MDKQSSAGGVKRSVPCDSNEANEMMPETSSGYSDPQPAPKKLKTSESSTILVVRYRRNVKRTSPEELVND
HARENRINPLQMEEEEFMEIMVEIPAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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