NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS48188.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48188.2 Public Homo sapiens X ZNF275 24 110 108 CCDS HistoryNCBI Gene:10838Re-query CCDS DB by CCDS ID:48188.2Re-query CCDS DB by GeneID:10838See the combined annotation on chromosome X in Sequence Viewer

Public Note for CCDS 48188.1
This CCDS ID was withdrawn because currently there is insufficient support for the transcript and the protein.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 48188.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370251.3 ENSP00000359271.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000370251.3Link to Ensembl Protein Viewer:ENSP00000359271.2Re-query CCDS DB by Nucleotide ID:ENST00000370251Re-query CCDS DB by Protein ID:ENSP00000359271
Original member Current member NCBI NM_001080485.4 NP_001073954.3 Accepted alive Link to Nucleotide Sequence:NM_001080485.4Link to Protein Sequence:NP_001073954.3Re-query CCDS DB by Nucleotide ID:NM_001080485Re-query CCDS DB by Protein ID:NP_001073954Link to BLAST:NP_001073954.3

Chromosomal Locations for CCDS 48188.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 153336680 153336710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153345520 153345621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153346819 153347655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153347754 153347773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (990 nt):
ATGATGAGTCATCCGTGTGTGTCTCTTTTGGGCGTTCCTGTTTTAAATCCTGCCTTGGTCCCTCACCTGG
CACAAGGACAAGTGCTACTGGTGTCAGACCCATCGCCCAACACTGATCCTGCTAAGTACTCTGAAAGCAC
CTCCGCGACCCGACACCAGATGAAGGGGGAAGATGCCCAGCCACAGGAGATGGCGTCCACAAGCTTCCCA
AGGGCCAGTGGTCCCAGTCCTGAATTCAGACAGCACGGGGACTCTGACGGGAAGAGAGGGAGCCCACAGA
ATCTGCCCATAGAACATCATTTTGCTTGTAAAGAGTGTGGGGACACCTTTCGGCTTAAAGTCCTGCTTGT
CCAGCACCAGAGAGTCCACAGTGAGGAGAAGGGCTGGGAATGTGGCGACTGCGGGAAGGTCTTTAGGGGG
GTGGCGGAGTTTAATGAGCACAGGAAAAGCCACGTAGCTGCGGAGCCCCAGCCCGGCCCCAGTAGGGCCC
TGGAGAATGCCGCGGAGAAGAGGGAGCAGATGGAGAGGGAGGCAAAGCCCTTCGAGTGCGAGGAGTGCGG
AAAACGGTTTAAGAAGAATGCAGGCCTGAGTCAGCATCTGAGGGTCCACAGCAGAGAGAAGCCCTTTGAT
TGCGAGGAATGCGGGCGGTCGTTCAAAGTCAACACCCACCTCTTCCGACATCAGAAACTTCACACTTCGG
AAAAGCCTTTCGCCTGCAAGGCGTGCAGCAGGGATTTCCTGGATCGCCAGGAGCTTCTCAAGCACCAGCG
CATGCACACTGGCCACCTGCCCTTCGACTGCGACGACTGCGGCAAGTCCTTCCGAGGGGTCAACGGGCTG
GCCGAGCACCAGCGCATCCACAGTGGGGCCAAGCCATACGGGTGTCCCCACTGCGGCAAGCTCTTCCGAA
GGAGCTCGGAGCTCACCAAGCACCGGCGGATCCACACGGGCGAGAAGCCCTACGCCTGCGGCCTTCCGTG
GGCCCTCTGA

Translation (329 aa):
MMSHPCVSLLGVPVLNPALVPHLAQGQVLLVSDPSPNTDPAKYSESTSATRHQMKGEDAQPQEMASTSFP
RASGPSPEFRQHGDSDGKRGSPQNLPIEHHFACKECGDTFRLKVLLVQHQRVHSEEKGWECGDCGKVFRG
VAEFNEHRKSHVAAEPQPGPSRALENAAEKREQMEREAKPFECEECGKRFKKNAGLSQHLRVHSREKPFD
CEECGRSFKVNTHLFRHQKLHTSEKPFACKACSRDFLDRQELLKHQRMHTGHLPFDCDDCGKSFRGVNGL
AEHQRIHSGAKPYGCPHCGKLFRRSSELTKHRRIHTGEKPYACGLPWAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH