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Report for CCDS13083.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13083.1 Public Homo sapiens 20 RASSF2 24 110 108 CCDS HistoryNCBI Gene:9770Re-query CCDS DB by CCDS ID:13083.1Re-query CCDS DB by GeneID:9770See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13083.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379376.2 ENSP00000368684.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000379376.2Link to Ensembl Protein Viewer:ENSP00000368684.2Re-query CCDS DB by Nucleotide ID:ENST00000379376Re-query CCDS DB by Protein ID:ENSP00000368684
Original member Current member EBI ENST00000379400.8 ENSP00000368710.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000379400.8Link to Ensembl Protein Viewer:ENSP00000368710.3Re-query CCDS DB by Nucleotide ID:ENST00000379400Re-query CCDS DB by Protein ID:ENSP00000368710
Original member Current member NCBI NM_014737.3 NP_055552.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014737.3Link to Protein Sequence:NP_055552.1Re-query CCDS DB by Nucleotide ID:NM_014737Re-query CCDS DB by Protein ID:NP_055552Link to BLAST:NP_055552.1
Original member Current member NCBI NM_170774.2 NP_739580.1 Accepted alive Link to Nucleotide Sequence:NM_170774.2Link to Protein Sequence:NP_739580.1Re-query CCDS DB by Nucleotide ID:NM_170774Re-query CCDS DB by Protein ID:NP_739580Link to BLAST:NP_739580.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055552.1 326 P50749-1 326 100% 0 0
NP_739580.1 326 P50749-1 326 100% 0 0

Chromosomal Locations for CCDS 13083.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 4784273 4784342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 4786231 4786328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 4787633 4787754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 4788217 4788268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 4789596 4789697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 4790451 4790611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 4792539 4792627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 4795815 4795966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 4798010 4798085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 4800972 4801030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (981 nt):
ATGGACTACAGCCACCAAACGTCCCTAGTCCCATGTGGACAAGATAAATACATTTCCAAAAATGAACTTC
TCTTGCATCTGAAGACCTACAACTTGTACTATGAAGGCCAGAATTTACAGCTCCGGCACCGGGAGGAAGA
AGACGAGTTCATTGTGGAGGGGCTCCTGAACATCTCCTGGGGCCTGCGCCGGCCCATTCGCCTGCAGATG
CAGGATGACAACGAACGCATTCGACCCCCTCCATCCTCCTCCTCCTGGCACTCTGGCTGTAACCTGGGGG
CTCAGGGAACCACTCTGAAGCCCCTGACTGTGCCCAAAGTTCAGATCTCAGAGGTGGATGCCCCGCCGGA
GGGTGACCAGATGCCAAGCTCCACAGACTCCAGGGGCCTGAAGCCCCTGCAGGAGGACACCCCACAGCTG
ATGCGCACACGCAGTGATGTTGGGGTGCGTCGCCGTGGCAATGTGAGGACGCCTAGTGACCAGCGGCGAA
TCAGACGCCACCGCTTCTCCATCAACGGCCATTTCTACAACCATAAGACATCCGTGTTCACACCAGCCTA
TGGCTCTGTCACCAACGTCCGCATCAACAGCACCATGACCACCCCACAGGTCCTGAAGCTGCTGCTCAAC
AAATTTAAGATTGAGAATTCAGCAGAGGAGTTTGCCTTGTACGTGGTCCATACGAGTGGTGAGAAACAGA
AGCTGAAGGCCACCGATTACCCGCTGATTGCCCGAATCCTCCAGGGCCCATGTGAGCAGATCTCCAAAGT
GTTCCTAATGGAGAAGGACCAGGTGGAGGAAGTCACCTACGACGTGGCCCAGTATATAAAGTTCGAGATG
CCGGTACTTAAAAGCTTCATTCAGAAGCTCCAGGAGGAAGAAGATCGGGAAGTAAAGAAGCTGATGCGCA
AGTACACCGTGCTCCGGCTAATGATTCGACAGAGGCTGGAGGAGATAGCCGAGACCCCAGCAACAATCTG
A

Translation (326 aa):
MDYSHQTSLVPCGQDKYISKNELLLHLKTYNLYYEGQNLQLRHREEEDEFIVEGLLNISWGLRRPIRLQM
QDDNERIRPPPSSSSWHSGCNLGAQGTTLKPLTVPKVQISEVDAPPEGDQMPSSTDSRGLKPLQEDTPQL
MRTRSDVGVRRRGNVRTPSDQRRIRRHRFSINGHFYNHKTSVFTPAYGSVTNVRINSTMTTPQVLKLLLN
KFKIENSAEEFALYVVHTSGEKQKLKATDYPLIARILQGPCEQISKVFLMEKDQVEEVTYDVAQYIKFEM
PVLKSFIQKLQEEEDREVKKLMRKYTVLRLMIRQRLEEIAETPATI


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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