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Report for CCDS75563.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75563.1 Public Homo sapiens 7 ZNF316 24 110 108 CCDS HistoryNCBI Gene:100131017Re-query CCDS DB by CCDS ID:75563.1Re-query CCDS DB by GeneID:100131017See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 75563.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000382252.6 ENSP00000477706.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000382252.6Link to Ensembl Protein Viewer:ENSP00000477706.1Re-query CCDS DB by Nucleotide ID:ENST00000382252Re-query CCDS DB by Protein ID:ENSP00000477706
Original member Current member NCBI NM_001278559.2 NP_001265488.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001278559.2Link to Protein Sequence:NP_001265488.1Re-query CCDS DB by Nucleotide ID:NM_001278559Re-query CCDS DB by Protein ID:NP_001265488Link to BLAST:NP_001265488.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001265488.1 1004 A6NFI3 1004 100% 0 0

Chromosomal Locations for CCDS 75563.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 6642410 6642764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6642964 6643073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6643822 6643948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6644480 6644593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6652303 6654611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3015 nt):
ATGGCGGCGCTCCACACGACTCCCGACTCCCCAGCTGCCCAGCTGGAGCGGGCAGAGGACGGGTCAGAGT
GCGACCCTGACCAGGAAGAAGAGGAGGAGGAGGAGGAAAAGGGGGAAGAGGTGCAGGAGGTGGAAGAAGA
GGAGGAGGAGATAGTGGTGGAGGAGGAGGAGGAGGGTGTGGCAGAGGTAGTGCAGGATGCGCAGGTGGAG
GCGGTGGCCGAGGTGGAGGTGGAGGCGGACGTGGAGGAGGAGGATGTGAAGGAGGTGCTGGCAGAGGAGG
AGTGTCCGGCGTTGGGGACCCAGGAGCGACTTAGCCGTGGTGGTGATGCCAAGTCCCCAGTTCTTCAGGA
AAAGGGCCTGCAGGCCTCCCGGGCTCCAGCCACTCCTAGGGATGAGGACCTGGAGGAGGAGGAAGAGGAG
GAGGAGGATGAGGACGAGGATGATTTGCTGACGGCTGGGTGTCAGGAGCTGGTGACGTTTGAAGATGTGG
CTGTGTACTTCTCCCTGGAGGAGTGGGAAAGGCTGGAAGCAGACCAGCGGGGCCTCTACCAGGAAGTCAT
GCAGGAGAACTATGGGATTCTCGTGTCCTTGGGATACCCAATTCCCAAGCCCGATCTGATCTTCCGGCTG
GAACAAGGGGAAGAACCTTGGGTCCCAGATAGTCCCCGACCTGAGGAAGGAGACATCGTCACTGGCGTCT
ACACAGGAGCCTGGTTCTGGACGGACGACATAGAGGACCACGAGGAGGAAGACGACGAGGACTTCCTGGC
GGAGGTGGCCGAGGAGGAGAACGAGCCCCCAGGGCTCTGGTCGGCGGCCTACGGCGTGGGGGACGTGCCT
GGGACGTGGGGGCCCGACGACTCGGATTCGGCGCAGACTCCAGAGGGGTGGGGACCCGACCCAGGCGGCC
TGGGGGTCCTGGCCGACGGCTCTGAAGCGAAGCCTTTCCTGCCCGGCCGGGAGCCGGGTGCGAACCTGCT
GTCGCCCTGGGCGTTCCCCGCCGCAGTGGCCCCGCCGGCCGGGAGGCCGGAGACCACGTGCGACGTGTGC
GGCAAGGTCTTCCCGCACCGCTCGCGGCTGGCCAAGCACCAGCGCTACCACGCGGCCGTCAAGCCCTTCG
GCTGCGAGGAGTGCGGCAAGGGCTTCGTGTACCGCTCGCACTTGGCCATCCACCAGCGCACGCACACCGG
CGAGAAGCCCTTCCCGTGCCCGGACTGCGGCAAGCGCTTCGTCTACAAGTCGCACCTGGTTACGCACCGA
CGCATCCATACTGGCGAGCGGCCCTACCGCTGCGCCTTCTGCGGCGCGGGCTTCGGGCGCCGCTCCTACC
TGGTCACGCACCAGCGCACGCACACCGGCGAGCGACCCTACCCGTGTTCGCACTGCGGCCGCAGCTTCAG
CCAGAGCTCGGCGCTGGCACGGCACCAGGCGGTGCACACGGCCGACCGCCCGCACTGCTGTCCCGACTGC
GGCCAGGCCTTCCGCCTGCGCGCCGACTTCCAGCGCCACCGACGCGGCGGGGGCTGCGCGGAGGCGGGTG
GTGACGGCCCCCGGCGGGAGCCCGGCGAGACGGCGGCCGCCGCGGGGCCCGAGGACACGGACCCTGGGCC
AGAGGGATCTGAAGTTGGCGAGGCGGACGGAGAGGCGGAGGCCGCGGCCGAGGAGAGAGAGGAGGCGGCG
GTGGCGGCGCCCACCCCCAGCGGCAAGGTGGACCCCGCGCCGGAACGGCGCTTCCTGGAGCTGGGCAACG
GCCTGGGGGAGGGCGAAGGCCCCTCCTCCCACCCGCTGGGCTTCCACTTCCCCGTGCACCCCAAGTCCTG
GCTGCACCCGGACAGCTTCCCGATCCTGGGCCTACCCGACTTCCGAGAGCGGCTGCCGGTCGACGGGCGC
CCGCTCCCGGCGCCCCTGGGGGGCCCGCTCTCCCTGGTGGAGGGTACCGGGCTGGCGTGCGACCCTTTCG
GCGGCGGCGGGGCCGCGGGCGGCGGAGGCGGCCTGCGCGCGTTCGGGCCCGCCATCGGGGGTCTGCTGGC
GGAGCCCGCGCCGGCCGCGCTGGCGGAGGAGGAGAGCCCGTGGATCTGCTCGGACTGCGGCAAGACGTTT
GGGCGCCGGGCCGCGCTGGCCAAGCACCAGCGCTACCACGCGGGCGAGCGGCCGCATCGCTGCGCCGACT
GCGGCAAGAGCTTCGTGTACGGCTCGCACCTGGCGCGCCACCGGCGCACACACACCGGCGAGCGGCCCTT
CCCGTGCCCCGAGTGCGGCGCGCGGTTCGCCCGCGGCTCGCACTTGGCGGCGCACGTGCGCGGCCACACG
GGCGAGAAGCCGTTCGTGTGCGGCGTGTGCGGTGCGGGGTTCAGCCGTCGCGCGCACTTGACGGCGCACG
GGCGCGCGCACACCGGGGAGCGGCCTTACGCGTGTGGAGAGTGCGGCCGGCGCTTCGGGCAGAGCGCGGC
GCTGACGCGGCATCAGTGGGCGCACGCCGAGGAGAAGCCGCACCGCTGCCCCGACTGCGGCAAGGGCTTC
GGCCACAGCTCGGACTTCAAGCGGCATCGGCGCACGCACACGGGCGAGAAGCCCTTCCGCTGCGCCGACT
GCGGCCGCGGCTTCGCGCAGCGCTCCAACCTGGCCAAGCACCGGCGCGGCCACACGGGCGAACGCCCCTT
CCCGTGCCCTGAGTGCGGCAAGCGCTTTTCGCAGCGCTCGGTGCTGGTCACGCACCAGCGCACACATACG
GGCGAGCGGCCCTACGCCTGCGCCAACTGCGGCCGCCGCTTCTCGCAGAGCTCGCACTTGCTCACCCACA
TGAAGACGCACCGCGGAGCCACCGCAGCGCCGGGCTCGGGTTCGGCCCCAGCCCCCGCGCCCAAGCCCGA
GGCGGCCGCCAAGGGGCCGTCCAGTGCCGGCCCCGGTGAGCGCGGCAGCGCCCTGCTGGAGTTCGCGGGC
GGCACAAGCTTCGGCTCCGAGCACCAGGCCGCGTTCGCCGGGCCCTCGGGCGCCTACCGGGAGGGCGTCC
TGTGA

Translation (1004 aa):
MAALHTTPDSPAAQLERAEDGSECDPDQEEEEEEEEKGEEVQEVEEEEEEIVVEEEEEGVAEVVQDAQVE
AVAEVEVEADVEEEDVKEVLAEEECPALGTQERLSRGGDAKSPVLQEKGLQASRAPATPRDEDLEEEEEE
EEDEDEDDLLTAGCQELVTFEDVAVYFSLEEWERLEADQRGLYQEVMQENYGILVSLGYPIPKPDLIFRL
EQGEEPWVPDSPRPEEGDIVTGVYTGAWFWTDDIEDHEEEDDEDFLAEVAEEENEPPGLWSAAYGVGDVP
GTWGPDDSDSAQTPEGWGPDPGGLGVLADGSEAKPFLPGREPGANLLSPWAFPAAVAPPAGRPETTCDVC
GKVFPHRSRLAKHQRYHAAVKPFGCEECGKGFVYRSHLAIHQRTHTGEKPFPCPDCGKRFVYKSHLVTHR
RIHTGERPYRCAFCGAGFGRRSYLVTHQRTHTGERPYPCSHCGRSFSQSSALARHQAVHTADRPHCCPDC
GQAFRLRADFQRHRRGGGCAEAGGDGPRREPGETAAAAGPEDTDPGPEGSEVGEADGEAEAAAEEREEAA
VAAPTPSGKVDPAPERRFLELGNGLGEGEGPSSHPLGFHFPVHPKSWLHPDSFPILGLPDFRERLPVDGR
PLPAPLGGPLSLVEGTGLACDPFGGGGAAGGGGGLRAFGPAIGGLLAEPAPAALAEEESPWICSDCGKTF
GRRAALAKHQRYHAGERPHRCADCGKSFVYGSHLARHRRTHTGERPFPCPECGARFARGSHLAAHVRGHT
GEKPFVCGVCGAGFSRRAHLTAHGRAHTGERPYACGECGRRFGQSAALTRHQWAHAEEKPHRCPDCGKGF
GHSSDFKRHRRTHTGEKPFRCADCGRGFAQRSNLAKHRRGHTGERPFPCPECGKRFSQRSVLVTHQRTHT
GERPYACANCGRRFSQSSHLLTHMKTHRGATAAPGSGSAPAPAPKPEAAAKGPSSAGPGERGSALLEFAG
GTSFGSEHQAAFAGPSGAYREGVL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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