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Report for CCDS7882.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7882.1 Public Homo sapiens 11 TCP11L1 24 110 108 CCDS HistoryNCBI Gene:55346Re-query CCDS DB by CCDS ID:7882.1Re-query CCDS DB by GeneID:55346See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7882.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000334274.9 ENSP00000335595.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000334274.9Link to Ensembl Protein Viewer:ENSP00000335595.4Re-query CCDS DB by Nucleotide ID:ENST00000334274Re-query CCDS DB by Protein ID:ENSP00000335595
Original member Current member EBI ENST00000432887.5 ENSP00000395070.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000432887.5Link to Ensembl Protein Viewer:ENSP00000395070.1Re-query CCDS DB by Nucleotide ID:ENST00000432887Re-query CCDS DB by Protein ID:ENSP00000395070
Original member Current member EBI ENST00000531632.6 ENSP00000433067.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000531632.6Link to Ensembl Protein Viewer:ENSP00000433067.1Re-query CCDS DB by Nucleotide ID:ENST00000531632Re-query CCDS DB by Protein ID:ENSP00000433067
Original member Current member NCBI NM_001145541.1 NP_001139013.1 Accepted alive Link to Nucleotide Sequence:NM_001145541.1Link to Protein Sequence:NP_001139013.1Re-query CCDS DB by Nucleotide ID:NM_001145541Re-query CCDS DB by Protein ID:NP_001139013Link to BLAST:NP_001139013.1
Original member Current member NCBI NM_018393.4 NP_060863.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018393.4Link to Protein Sequence:NP_060863.3Re-query CCDS DB by Nucleotide ID:NM_018393Re-query CCDS DB by Protein ID:NP_060863Link to BLAST:NP_060863.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139013.1 509 Q9NUJ3 509 100% 0 0
NP_060863.3 509 Q9NUJ3 509 100% 0 0

Chromosomal Locations for CCDS 7882.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 33043774 33043936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 33054593 33054725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 33057115 33057235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 33057919 33058139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 33058959 33059095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 33061530 33061726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 33065830 33066011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 33068687 33068859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 33072474 33072676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1530 nt):
ATGTCTGAAAACCTTGACAAGTCCAATGTAAATGAAGCAGGAAAATCAAAATCCAATGATTCTGAGGAAG
GCCTCGAAGATGCTGTGGAAGGTGCTGATGAAGCCTTACAAAAAGCAATAAAGTCAGACTCCTCCAGCCC
CCAAAGAGTGCAGAGACCTCACTCTAGTCCTCCTCGCTTTGTGACAGTAGAAGAACTTCTAGAGACAGCG
AGAGGTGTCACCAACATGGCTCTAGCCCATGAAATTGTAGTAAATGGAGACTTTCAGATTAAACCAGTTG
AATTACCAGAAAACAGCTTGAAGAAGAGAGTAAAGGAGATTGTACATAAAGCGTTTTGGGATTGCTTGAG
TGTGCAGCTAAGTGAAGATCCCCCAGCATATGACCATGCTATCAAACTTGTAGGAGAAATCAAAGAGACT
CTCTTATCTTTCTTGCTGCCTGGTCATACTAGACTGAGAAACCAGATAACAGAAGTCTTGGATCTGGATC
TGATAAAGCAGGAAGCAGAGAATGGGGCGCTAGACATTTCCAAGCTGGCAGAATTCATTATTGGCATGAT
GGGGACACTGTGTGCACCTGCTCGAGATGAGGAAGTTAAGAAACTAAAGGACATTAAGGAAATAGTGCCC
CTTTTCAGAGAAATTTTTTCTGTGTTGGACCTAATGAAAGTGGACATGGCCAACTTTGCTATCAGTAGCA
TCAGGCCTCATCTCATGCAGCAGTCAGTTGAATACGAAAGGAAGAAGTTTCAAGAGATTTTGGAGAGGCA
ACCAAATTCCCTGGACTTTGTCACCCAGTGGCTGGAAGAAGCCTCAGAGGACCTTATGACTCAGAAGTAT
AAACACGCCCTGCCAGTGGGGGGAATGGCTGCTGGCTCTGGGGACATGCCCAGGCTGAGCCCTGTTGCTG
TCCAGAATTACGCTTACCTGAAGCTTCTGAAGTGGGACCACCTCCAGAGGCCGTTCCCCGAAACAGTTTT
AATGGACCAGTCTCGCTTCCACGAGCTCCAGTTGCAGCTGGAACAACTGACCATCCTGGGGGCTGTGTTG
CTGGTCACCTTCAGCATGGCAGCGCCAGGAATTTCCAGCCAGGCCGACTTTGCTGAGAAACTCAAGATGA
TTGTGAAGATTTTGCTAACAGATATGCACCTGCCCTCCTTCCATCTGAAGGACGTCCTCACTACCATCGG
GGAGAAGGTGTGCCTGGAGGTGAGCAGCTGCCTCTCCCTGTGTGGGTCCTCTCCCTTCACCACGGACAAG
GAGACCGTGCTCAAGGGCCAGATCCAGGCCGTGGCCAGTCCCGATGACCCCATTCGCAGGATCATGGAAT
CTCGAATCCTGACCTTCTTAGAAACCTACCTTGCCTCGGGTCATCAGAAGCCATTGCCCACAGTCCCTGG
GGGACTCAGTCCAGTTCAGAGAGAGCTGGAGGAAGTTGCTATTAAATTTGCTCGCCTGGTCAACTATAAC
AAGATGGTCTTCTGTCCCTACTACGATGCAATCCTGAGTAAGATCCTCGTCCGATCCTAA

Translation (509 aa):
MSENLDKSNVNEAGKSKSNDSEEGLEDAVEGADEALQKAIKSDSSSPQRVQRPHSSPPRFVTVEELLETA
RGVTNMALAHEIVVNGDFQIKPVELPENSLKKRVKEIVHKAFWDCLSVQLSEDPPAYDHAIKLVGEIKET
LLSFLLPGHTRLRNQITEVLDLDLIKQEAENGALDISKLAEFIIGMMGTLCAPARDEEVKKLKDIKEIVP
LFREIFSVLDLMKVDMANFAISSIRPHLMQQSVEYERKKFQEILERQPNSLDFVTQWLEEASEDLMTQKY
KHALPVGGMAAGSGDMPRLSPVAVQNYAYLKLLKWDHLQRPFPETVLMDQSRFHELQLQLEQLTILGAVL
LVTFSMAAPGISSQADFAEKLKMIVKILLTDMHLPSFHLKDVLTTIGEKVCLEVSSCLSLCGSSPFTTDK
ETVLKGQIQAVASPDDPIRRIMESRILTFLETYLASGHQKPLPTVPGGLSPVQRELEEVAIKFARLVNYN
KMVFCPYYDAILSKILVRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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